Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   SR187_RS08265 Genome accession   NZ_AP018400
Coordinates   1741777..1743564 (-) Length   595 a.a.
NCBI ID   WP_120172168.1    Uniprot ID   A0A2Z5TPX0
Organism   Streptococcus ruminantium strain GUT-187     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1736777..1748564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR187_RS08245 (SR187_8460) - 1737577..1738479 (-) 903 WP_024531884.1 ABC transporter permease -
  SR187_RS08250 (SR187_8465) opp4B 1738490..1739446 (-) 957 WP_024531883.1 oligopeptide ABC transporter permease -
  SR187_RS08255 (SR187_8470) - 1739448..1740389 (-) 942 WP_029751314.1 ATP-binding cassette domain-containing protein -
  SR187_RS08260 (SR187_8475) - 1740394..1741392 (-) 999 WP_120172167.1 ABC transporter ATP-binding protein -
  SR187_RS08265 (SR187_8485) oppA 1741777..1743564 (-) 1788 WP_120172168.1 oligopeptide ABC transporter substrate-binding protein Regulator
  SR187_RS08270 (SR187_8490) pbp3 1743775..1745016 (+) 1242 WP_024531879.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SR187_RS08275 (SR187_8495) sufB 1745250..1746665 (-) 1416 WP_120172170.1 Fe-S cluster assembly protein SufB -
  SR187_RS08280 (SR187_8500) sufU 1746839..1747279 (-) 441 WP_120172171.1 Fe-S cluster assembly sulfur transfer protein SufU -
  SR187_RS08285 (SR187_8505) - 1747266..1748486 (-) 1221 WP_120172173.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65823.27 Da        Isoelectric Point: 5.1815

>NTDB_id=69462 SR187_RS08265 WP_120172168.1 1741777..1743564(-) (oppA) [Streptococcus ruminantium strain GUT-187]
MKKTTKLFALAGVTLLSVAALSACGSKKSNTAKQDLSFPSEVKQEGTAVAGAQLKVAWVSATTSTGLLIDELTSNTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKVKISLTGKDYKWSDGQPFTINDYIFTIKAMASKDYTGVRFDDRFLN
IVGMEEFVAGKASDISGIKKIDDHTVELSVKEVFPSMMYAGGKLPAFVQPEHIYKNIPVKDWESSEYSRTAKIVGMGPWK
IKEIVNGESITYVPNEHYFKGAPKTSSMKVDIVSPDTIVAEMKAGNYDIADMPSDQVDSYKGLSNLNIVGSLDSSYEYIS
FNLGKYDNDQSKNVMDENAKMNDVKLRQAIAHAIDTKTAGEKLYHGLYHPAKSLIISFFGDLHDSELEGYTYNPEKAKKL
LDEAGYKDVDGDGIREGKDGKPFKISFAARKRTEANEALMQQYLAWWKEVGLNVELYTGRTIEGNTFYEMIKANDANIDM
YAAGWSTGYDPNPTGLWGPNAKFNMSRFVSDEHTKLLEAFKSEEAFDEKKNLENYKAWQKYAADQVFAIPTFESEVLVAL
NKRVKNYDTKLGSASGNGLAYENIELLADKGEAAK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=69462 SR187_RS08265 WP_120172168.1 1741777..1743564(-) (oppA) [Streptococcus ruminantium strain GUT-187]
ATGAAGAAGACAACGAAACTTTTTGCACTTGCTGGTGTGACTCTCCTCTCAGTAGCGGCTCTTTCAGCATGTGGTTCTAA
GAAATCGAATACTGCAAAGCAAGATTTGTCATTCCCATCTGAAGTAAAACAAGAGGGAACTGCTGTTGCGGGTGCTCAAC
TGAAGGTTGCTTGGGTCTCAGCTACAACTTCAACAGGTCTTTTGATTGACGAATTGACTTCAAATACCACTGACTCAACA
TTCGGTGGCATGGTTGATATTTCAATGTTTGGCTATGATGGTGACCGCAAGTTAGACGATTCAGGTCTTGCCAAGGCTGA
GTTTGATGTAAAAGGGAAAAAAGTAAAGATTAGCTTGACAGGTAAAGACTACAAGTGGTCTGATGGTCAACCGTTTACTA
TCAACGACTATATCTTCACCATCAAGGCAATGGCAAGCAAAGATTATACCGGTGTTCGTTTTGACGATAGATTTTTGAAT
ATTGTTGGTATGGAAGAGTTTGTTGCTGGAAAAGCTTCTGACATCTCTGGTATTAAGAAAATTGACGACCATACAGTGGA
ACTATCCGTAAAAGAAGTATTCCCGTCAATGATGTATGCTGGTGGTAAATTGCCTGCCTTCGTACAACCTGAACACATCT
ACAAAAACATTCCGGTCAAAGACTGGGAGAGCAGCGAGTACTCACGTACAGCTAAGATTGTAGGTATGGGACCTTGGAAG
ATCAAGGAAATCGTTAACGGTGAGTCTATCACATACGTTCCAAATGAGCATTACTTCAAGGGTGCGCCGAAAACAAGCTC
GATGAAGGTGGATATTGTGTCACCTGATACAATTGTTGCTGAAATGAAGGCTGGTAACTACGACATTGCGGATATGCCAT
CAGATCAGGTGGATTCGTATAAAGGCTTATCTAACCTTAATATTGTCGGTAGCCTTGACTCAAGTTATGAATATATCTCC
TTTAATCTTGGTAAATATGATAACGATCAGTCCAAAAATGTGATGGACGAAAATGCTAAGATGAATGATGTGAAACTTCG
TCAAGCGATTGCTCACGCAATTGATACGAAGACGGCGGGCGAGAAATTGTACCATGGTCTTTACCACCCAGCTAAGTCAT
TGATTATCTCATTCTTCGGTGATCTTCATGATTCAGAATTGGAAGGCTACACTTACAATCCAGAAAAAGCTAAGAAACTC
TTGGATGAAGCTGGTTATAAGGATGTAGACGGAGATGGTATCCGCGAAGGTAAAGATGGTAAACCATTCAAGATTTCGTT
CGCAGCTCGTAAGCGTACAGAAGCTAACGAAGCCCTTATGCAGCAGTACCTTGCTTGGTGGAAAGAAGTTGGCTTGAATG
TTGAGCTGTACACAGGGCGTACAATTGAAGGTAATACATTCTATGAAATGATTAAGGCGAATGATGCAAACATTGATATG
TATGCTGCCGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTCTCTGGGGTCCAAATGCGAAGTTTAACATGTCACG
CTTTGTTTCTGATGAACATACTAAATTGCTAGAAGCATTTAAATCAGAAGAAGCATTTGACGAGAAGAAAAATCTTGAAA
ACTACAAGGCATGGCAAAAATATGCTGCTGATCAGGTATTTGCTATTCCAACATTTGAGTCGGAAGTCTTGGTTGCTCTC
AACAAGCGTGTGAAGAACTATGATACTAAACTTGGATCAGCGTCAGGCAATGGTCTTGCTTATGAAAATATCGAGCTTCT
TGCAGACAAAGGTGAAGCTGCGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(122-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5TPX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

82.718

100

0.829

Multiple sequence alignment