Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NB640_RS04220 Genome accession   NZ_CP098242
Coordinates   849113..850534 (+) Length   473 a.a.
NCBI ID   WP_269309925.1    Uniprot ID   -
Organism   Oxalobacter vibrioformis strain WoOx3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 844113..855534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB640_RS04195 (NB640_04190) - 845662..846678 (+) 1017 WP_269309919.1 SIS domain-containing protein -
  NB640_RS04200 (NB640_04195) - 846678..847205 (+) 528 WP_269309920.1 HAD family hydrolase -
  NB640_RS04205 (NB640_04200) lptC 847202..847798 (+) 597 WP_269309921.1 LPS export ABC transporter periplasmic protein LptC -
  NB640_RS04210 (NB640_04205) lptA 847814..848356 (+) 543 WP_269309922.1 lipopolysaccharide transport periplasmic protein LptA -
  NB640_RS04215 (NB640_04210) lptB 848357..849100 (+) 744 WP_269309924.1 LPS export ABC transporter ATP-binding protein -
  NB640_RS04220 (NB640_04215) rpoN/rpoN1 849113..850534 (+) 1422 WP_269309925.1 RNA polymerase factor sigma-54 Machinery gene
  NB640_RS04225 (NB640_04220) hpf 850615..850959 (+) 345 WP_269309926.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NB640_RS04230 (NB640_04225) - 851021..851500 (-) 480 WP_269309927.1 CYTH domain-containing protein -
  NB640_RS04240 (NB640_04235) - 852337..852711 (-) 375 WP_269309928.1 hypothetical protein -
  NB640_RS04245 (NB640_04240) mobF 852723..855518 (-) 2796 WP_269309929.1 MobF family relaxase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53309.77 Da        Isoelectric Point: 6.2812

>NTDB_id=694613 NB640_RS04220 WP_269309925.1 849113..850534(+) (rpoN/rpoN1) [Oxalobacter vibrioformis strain WoOx3]
MKLKQQSRLTQQLALTPRLQRAIRLLQLSATSLNLEIEKALEDNPFLERVDNLLDSALHLTADDTLISNESAANRVTIDS
EAPADGSLDFRSPSHTAQVPNNDDMASPMEAPSPSLREHLTTQIHMRLNEQRQLALAELIIDALDENGFLIETLDEMLEW
LPEALNIQRSELETALRQVQDLEPPGIAARNSVECLAIQLKKLPGLPYVTRKRAITIVENHLPLLARRDFSRLKKLLDCD
DEDLTDARKAIHSCDPHPAASFSAEKAHTLVPELLAFYQDGQWQIGLNPAALPKIRISSLYADIMKNAENRQTMNTQLQE
ANWFIRNLQQRYETILKTGQAIAERQQPFFSDGPISMRPLVLHEIADTLELHESTISRVTNQKYMHTPHGIVELKSFFGS
HLTTESGNTVSSTAIRERIRQLIGAEDQKKPLSDNRIAQILGEQGLVIARRTVAKYRETLKIPSAHMRKSLSL

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=694613 NB640_RS04220 WP_269309925.1 849113..850534(+) (rpoN/rpoN1) [Oxalobacter vibrioformis strain WoOx3]
ATGAAACTGAAACAGCAATCCCGCCTTACACAGCAACTTGCGCTCACTCCCCGTCTACAGCGCGCCATCCGGCTTTTACA
GCTGTCAGCCACCAGCCTCAACCTGGAAATTGAAAAGGCGCTGGAAGATAATCCGTTTCTGGAACGCGTGGACAACCTGC
TGGACAGTGCACTGCATCTCACCGCGGATGACACACTTATCAGCAACGAATCTGCCGCAAATCGGGTAACAATTGATAGC
GAAGCGCCGGCTGATGGGTCTCTGGACTTCCGGAGCCCGTCCCATACCGCACAGGTTCCTAATAATGACGATATGGCTTC
CCCGATGGAAGCCCCATCCCCTTCTCTGCGAGAGCATCTGACAACCCAGATACACATGCGTTTGAATGAGCAGCGTCAGT
TGGCTCTGGCTGAGCTGATTATTGATGCGCTGGATGAAAACGGCTTCCTCATTGAGACGCTTGACGAGATGCTTGAGTGG
CTACCTGAAGCGCTCAATATCCAGCGGTCCGAGCTGGAAACGGCCTTAAGGCAAGTGCAGGATCTCGAGCCTCCCGGCAT
TGCGGCAAGAAACAGCGTCGAATGCCTCGCTATCCAGTTGAAAAAACTGCCGGGACTGCCTTATGTCACGCGTAAAAGAG
CCATTACGATTGTTGAAAATCATCTGCCTCTTTTGGCCCGACGGGATTTTTCCCGGCTGAAGAAGCTGCTGGATTGCGAT
GATGAAGATCTGACAGATGCCCGAAAAGCCATCCATTCCTGTGATCCGCATCCTGCAGCATCCTTTTCTGCTGAAAAAGC
CCATACCCTGGTGCCGGAACTGCTGGCCTTTTATCAGGATGGCCAGTGGCAAATCGGACTGAATCCGGCAGCCCTGCCAA
AGATCCGCATCAGCTCCCTGTATGCCGACATCATGAAAAATGCGGAAAACCGCCAAACCATGAATACACAGTTACAGGAA
GCAAACTGGTTTATCCGCAACCTGCAGCAGCGTTATGAGACCATTCTCAAAACAGGACAGGCCATTGCGGAAAGACAGCA
GCCGTTCTTTTCTGATGGCCCCATATCGATGAGGCCACTTGTATTGCACGAAATAGCTGATACACTAGAACTGCACGAGA
GCACGATTTCCCGTGTGACAAACCAGAAATACATGCACACGCCGCATGGTATAGTTGAACTGAAGTCCTTTTTCGGAAGC
CATCTGACAACGGAATCAGGCAACACCGTTTCATCAACAGCCATTCGGGAACGAATCCGGCAACTTATAGGAGCAGAAGA
CCAGAAAAAACCCTTATCAGACAACCGAATCGCACAGATACTGGGAGAACAGGGATTGGTGATTGCCCGTCGAACCGTCG
CGAAATACCGCGAAACCCTGAAAATTCCTTCCGCTCATATGCGAAAGTCTCTGTCTCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-301)

Sigma-54, DNA binding domain (Sigma54_DBD)

(313-469)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.337

100

0.495