Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NB640_RS00970 Genome accession   NZ_CP098242
Coordinates   181071..182441 (-) Length   456 a.a.
NCBI ID   WP_269309277.1    Uniprot ID   -
Organism   Oxalobacter vibrioformis strain WoOx3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 176071..187441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB640_RS00945 (NB640_00940) hpnD 176410..177243 (+) 834 WP_269309272.1 presqualene diphosphate synthase HpnD -
  NB640_RS00950 (NB640_00945) hpnE 177230..178549 (+) 1320 WP_269309273.1 hydroxysqualene dehydroxylase HpnE -
  NB640_RS00955 (NB640_00950) - 178965..179486 (+) 522 WP_269309274.1 rhodanese-like domain-containing protein -
  NB640_RS00960 (NB640_00955) - 179560..180558 (-) 999 WP_269309275.1 tetratricopeptide repeat protein -
  NB640_RS00965 (NB640_00960) - 180699..180890 (-) 192 WP_269309276.1 hypothetical protein -
  NB640_RS00970 (NB640_00965) radA 181071..182441 (-) 1371 WP_269309277.1 DNA repair protein RadA Machinery gene
  NB640_RS00975 (NB640_00970) alr 182441..183517 (-) 1077 WP_269309278.1 alanine racemase -
  NB640_RS00980 (NB640_00975) lplT 183690..184940 (+) 1251 WP_269309279.1 lysophospholipid transporter LplT -
  NB640_RS00985 (NB640_00980) - 184965..185702 (+) 738 WP_269309280.1 energy transducer TonB -
  NB640_RS00990 (NB640_00985) - 185839..187071 (+) 1233 WP_269309281.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48559.04 Da        Isoelectric Point: 7.7974

>NTDB_id=694608 NB640_RS00970 WP_269309277.1 181071..182441(-) (radA) [Oxalobacter vibrioformis strain WoOx3]
MAKAKTNYTCTECGGTSSKWAGQCSACGQWNTLVETVIEKAANRFSGQHKGLAGAAPVQNLAEIDAQDVPRIITGIDEFD
RVLGGGLVPGGVVLIGGDPGIGKSTLLLQALANLAQLHRVLYVSGEESGAQIALRAKRLALPTRDLQLQAEIQLEKILAT
ISDQKPDIAVIDSIQTLYSDALTSAPGSVAQVRETAAQLTRMAKQTGTSIILVGHVTKEGSLAGPRVLEHIVDTVLYFEG
DAHSSFRLVRAFKNRFGAVNEIGVFAMTETGLKGVSNPSALFLSHHEKQVPGACVMVTQEGMRPLLVEIQALVDASPLPN
ARRLSVGLEHNRLAMLLAVLHRHAGIAAYDQDVFINAVGGVRITEPAADLAVLLAIHSSLRNRPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAVKLGFSTAIIPKANAPKQKLEGMTIIAVERIDEALQRLGEIQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=694608 NB640_RS00970 WP_269309277.1 181071..182441(-) (radA) [Oxalobacter vibrioformis strain WoOx3]
ATGGCCAAAGCCAAAACGAATTACACCTGCACCGAATGCGGAGGCACCAGCAGCAAGTGGGCAGGACAGTGCAGTGCCTG
CGGGCAGTGGAATACCCTGGTCGAAACCGTCATCGAAAAAGCCGCCAACCGTTTTTCCGGACAGCACAAGGGACTGGCCG
GTGCGGCACCCGTGCAGAATCTGGCAGAAATCGACGCACAGGACGTGCCACGCATCATCACCGGCATCGATGAATTTGAC
CGGGTATTGGGCGGCGGGCTGGTGCCGGGCGGTGTCGTCCTCATCGGCGGAGACCCCGGTATCGGCAAATCAACGCTGCT
TTTGCAGGCGCTGGCCAATCTTGCCCAGCTTCACAGGGTGCTCTATGTGAGCGGCGAAGAATCCGGGGCCCAGATTGCGC
TCAGGGCAAAACGCCTTGCGCTGCCGACGCGTGACCTGCAATTGCAGGCCGAAATCCAGCTCGAAAAAATCCTTGCAACC
ATCAGCGACCAAAAGCCCGATATTGCTGTCATCGACTCCATCCAGACCCTCTATTCCGACGCCCTGACATCCGCACCCGG
ATCTGTCGCCCAGGTAAGGGAAACCGCCGCACAGCTGACCCGCATGGCCAAGCAGACCGGTACCAGCATCATCCTCGTCG
GTCACGTTACCAAGGAAGGCTCTCTGGCCGGGCCGCGCGTGCTCGAACATATCGTCGATACCGTGCTTTACTTCGAGGGA
GATGCCCATTCCAGCTTTCGCCTCGTCAGGGCATTCAAGAACCGCTTTGGCGCCGTCAACGAGATCGGCGTTTTTGCCAT
GACAGAGACGGGCCTGAAAGGCGTATCCAATCCTTCCGCGCTCTTTTTGTCACACCATGAAAAACAGGTGCCGGGCGCCT
GTGTCATGGTCACCCAGGAAGGCATGCGCCCGCTGCTGGTCGAAATCCAGGCGCTCGTCGATGCCTCACCGCTGCCCAAT
GCCCGCCGTCTTTCGGTGGGGCTTGAGCACAACCGCCTGGCTATGCTGCTGGCTGTGCTGCACCGGCATGCAGGCATTGC
CGCCTATGACCAGGACGTCTTCATCAATGCCGTCGGGGGTGTGCGAATCACCGAACCGGCAGCCGATCTGGCCGTGCTGC
TGGCCATCCATTCCTCACTGCGCAACCGTCCCCTGCCCAGGGGGCTCGTAGTATTTGGTGAAGTCGGCCTGGCAGGTGAA
ATCCGTCCCGCGCCACGCGGCCAGGAGCGCCTGCGCGAAGCCGTCAAGCTGGGATTTTCCACCGCCATTATCCCGAAAGC
CAACGCCCCCAAACAGAAGCTGGAAGGCATGACCATCATCGCGGTCGAAAGGATCGACGAGGCGTTGCAACGTCTCGGTG
AAATTCAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.537

100

0.471
  radA Streptococcus pneumoniae D39

46.537

100

0.471
  radA Streptococcus pneumoniae R6

46.537

100

0.471
  radA Streptococcus pneumoniae TIGR4

46.537

100

0.471
  radA Streptococcus mitis SK321

46.537

100

0.471
  radA Streptococcus mitis NCTC 12261

46.32

100

0.469