Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY12_RS08670 Genome accession   NZ_CP098223
Coordinates   1838015..1838644 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Z0117EC0005     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833015..1843644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY12_RS08650 (NBY12_08660) ycbZ 1833404..1835164 (-) 1761 WP_032302812.1 Lon protease family protein -
  NBY12_RS08655 (NBY12_08665) matP 1835350..1835802 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NBY12_RS08660 (NBY12_08670) ompA 1835878..1836930 (-) 1053 WP_000750415.1 porin OmpA -
  NBY12_RS08665 (NBY12_08675) sulA 1837287..1837796 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NBY12_RS08670 (NBY12_08680) sxy/tfoX 1838015..1838644 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY12_RS08675 (NBY12_08685) yccS 1838607..1840769 (-) 2163 WP_000875038.1 YccS family putative transporter -
  NBY12_RS08680 (NBY12_08690) yccF 1840779..1841225 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NBY12_RS08685 (NBY12_08695) helD 1841348..1843402 (+) 2055 WP_032302813.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=694499 NBY12_RS08670 WP_000839153.1 1838015..1838644(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0005]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694499 NBY12_RS08670 WP_000839153.1 1838015..1838644(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0005]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATACTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1