Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY13_RS08605 Genome accession   NZ_CP098219
Coordinates   1832894..1833523 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain Z0117EC0013     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1827894..1838523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY13_RS08585 (NBY13_08585) ycbZ 1828284..1830044 (-) 1761 WP_000156502.1 Lon protease family protein -
  NBY13_RS08590 (NBY13_08590) matP 1830230..1830682 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  NBY13_RS08595 (NBY13_08595) ompA 1830758..1831810 (-) 1053 WP_001346420.1 porin OmpA -
  NBY13_RS08600 (NBY13_08600) sulA 1832166..1832675 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  NBY13_RS08605 (NBY13_08605) sxy/tfoX 1832894..1833523 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY13_RS08610 (NBY13_08610) yccS 1833486..1835648 (-) 2163 WP_000875041.1 YccS family putative transporter -
  NBY13_RS08615 (NBY13_08615) yccF 1835658..1836104 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NBY13_RS08620 (NBY13_08620) helD 1836227..1838281 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=694476 NBY13_RS08605 WP_000839151.1 1832894..1833523(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0013]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694476 NBY13_RS08605 WP_000839151.1 1832894..1833523(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0013]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995