Detailed information NTG0694451

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP66_RS03270
• Genome accession: NZ_CP115191
• Coordinates: 686385..687389 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain LRJ32
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 681385..692389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP66_RS03240 (PCP66_03245)	fghA	681477..682328 (+)	852	WP_003098562.1	S-formylglutathione hydrolase	-
PCP66_RS03245 (PCP66_03250)	ispF	682399..682872 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP66_RS03250 (PCP66_03255)	truD	682869..683936 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PCP66_RS03255 (PCP66_03260)	surE	683924..684673 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP66_RS03260 (PCP66_03265)	-	684706..685341 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP66_RS03265 (PCP66_03270)	-	685387..686280 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP66_RS03270 (PCP66_03275)	rpoS	686385..687389 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP66_RS03275 (PCP66_03280)	fdxA	687816..688139 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP66_RS03280 (PCP66_03285)	mutS	688206..690773 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP66_RS03285 (PCP66_03290)	-	690899..691906 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=694451 PCP66_RS03270 WP_003113871.1 686385..687389(+) (rpoS) [Pseudomonas aeruginosa strain LRJ32]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=694451 PCP66_RS03270 WP_003113871.1 686385..687389(+) (rpoS) [Pseudomonas aeruginosa strain LRJ32]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653