Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY15_RS15775 Genome accession   NZ_CP098214
Coordinates   3177021..3177650 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain Z0117EC0036     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3172021..3182650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY15_RS15760 (NBY15_15755) helD 3172263..3174317 (-) 2055 WP_001580558.1 DNA helicase IV -
  NBY15_RS15765 (NBY15_15760) yccF 3174440..3174886 (+) 447 WP_001261236.1 YccF domain-containing protein -
  NBY15_RS15770 (NBY15_15765) yccS 3174896..3177058 (+) 2163 WP_000875041.1 YccS family putative transporter -
  NBY15_RS15775 (NBY15_15770) sxy/tfoX 3177021..3177650 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY15_RS15780 (NBY15_15775) sulA 3177869..3178378 (+) 510 WP_021520629.1 SOS-induced cell division inhibitor SulA -
  NBY15_RS15785 (NBY15_15780) ompA 3178734..3179774 (+) 1041 WP_001313715.1 porin OmpA -
  NBY15_RS15790 (NBY15_15785) matP 3179851..3180303 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  NBY15_RS15795 (NBY15_15790) ycbZ 3180489..3182249 (+) 1761 WP_220401772.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=694441 NBY15_RS15775 WP_000839136.1 3177021..3177650(-) (sxy/tfoX) [Escherichia coli strain Z0117EC0036]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694441 NBY15_RS15775 WP_000839136.1 3177021..3177650(-) (sxy/tfoX) [Escherichia coli strain Z0117EC0036]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99