Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY16_RS14690 Genome accession   NZ_CP098211
Coordinates   3019563..3020192 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Z0117EC0040     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3014563..3025192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY16_RS14675 (NBY16_14675) helD 3014805..3016859 (-) 2055 WP_048963534.1 DNA helicase IV -
  NBY16_RS14680 (NBY16_14680) yccF 3016982..3017428 (+) 447 WP_001261231.1 YccF domain-containing protein -
  NBY16_RS14685 (NBY16_14685) yccS 3017438..3019600 (+) 2163 WP_000875044.1 YccS family putative transporter -
  NBY16_RS14690 (NBY16_14690) sxy/tfoX 3019563..3020192 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY16_RS14695 (NBY16_14695) sulA 3020411..3020920 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NBY16_RS14700 (NBY16_14700) ompA 3021277..3022317 (+) 1041 WP_000750416.1 porin OmpA -
  NBY16_RS14705 (NBY16_14705) matP 3022393..3022845 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NBY16_RS14710 (NBY16_14710) ycbZ 3023031..3024791 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=694418 NBY16_RS14690 WP_000839153.1 3019563..3020192(-) (sxy/tfoX) [Escherichia coli strain Z0117EC0040]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694418 NBY16_RS14690 WP_000839153.1 3019563..3020192(-) (sxy/tfoX) [Escherichia coli strain Z0117EC0040]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1