Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY18_RS15550 Genome accession   NZ_CP098206
Coordinates   3152432..3153061 (-) Length   209 a.a.
NCBI ID   WP_000839137.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0054     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3147432..3158061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY18_RS15535 (NBY18_15530) helD 3147674..3149728 (-) 2055 WP_001350178.1 DNA helicase IV -
  NBY18_RS15540 (NBY18_15535) yccF 3149851..3150297 (+) 447 WP_001261236.1 YccF domain-containing protein -
  NBY18_RS15545 (NBY18_15540) yccS 3150307..3152469 (+) 2163 WP_000875041.1 YccS family putative transporter -
  NBY18_RS15550 (NBY18_15545) sxy/tfoX 3152432..3153061 (-) 630 WP_000839137.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY18_RS15555 (NBY18_15550) sulA 3153280..3153789 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  NBY18_RS15560 (NBY18_15555) ompA 3154145..3155185 (+) 1041 WP_001350588.1 porin OmpA -
  NBY18_RS15565 (NBY18_15560) matP 3155264..3155716 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  NBY18_RS15570 (NBY18_15565) ycbZ 3155902..3157662 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24055.99 Da        Isoelectric Point: 9.4081

>NTDB_id=694374 NBY18_RS15550 WP_000839137.1 3152432..3153061(-) (sxy/tfoX) [Escherichia coli strain Z0117EC0054]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAGLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694374 NBY18_RS15550 WP_000839137.1 3152432..3153061(-) (sxy/tfoX) [Escherichia coli strain Z0117EC0054]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGGACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986