Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SR187_RS01230 Genome accession   NZ_AP018400
Coordinates   227618..228331 (+) Length   237 a.a.
NCBI ID   WP_120171265.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-187     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 222618..233331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR187_RS01220 (SR187_1240) treC 223637..225268 (-) 1632 WP_120171263.1 alpha,alpha-phosphotrehalase -
  SR187_RS01225 (SR187_1245) treP 225391..227394 (-) 2004 WP_120171264.1 PTS system trehalose-specific EIIBC component -
  SR187_RS01230 (SR187_1250) treR 227618..228331 (+) 714 WP_120171265.1 trehalose operon repressor Regulator
  SR187_RS01235 (SR187_1255) - 228387..228698 (+) 312 WP_024531596.1 hypothetical protein -
  SR187_RS01240 (SR187_1260) - 228695..229243 (+) 549 WP_024531597.1 CvpA family protein -
  SR187_RS01245 (SR187_1265) - 229370..231703 (+) 2334 WP_120171266.1 endonuclease MutS2 -
  SR187_RS01250 (SR187_1270) - 231840..232064 (-) 225 WP_120171267.1 hypothetical protein -
  SR187_RS01255 (SR187_1275) - 232073..232597 (-) 525 WP_145981829.1 hypothetical protein -
  SR187_RS01260 - 232605..232997 (-) 393 WP_120171269.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27363.36 Da        Isoelectric Point: 8.9042

>NTDB_id=69435 SR187_RS01230 WP_120171265.1 227618..228331(+) (treR) [Streptococcus ruminantium strain GUT-187]
MKKYQEIYNDLKEKIRTNVYLAETSLPTEQELQKIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPISGLT
SYQELTDSLQLSTQTKVVHLDMITVDSSLSSLTGFETYSKVWKVIRTRSIDGKVSVVDTDYLSVDVVPKLTVDVAEKSIY
EYLENELGLDIAYAQKEITVEPTNREERRLLKAQDDYLVLIKSRVYLGDTKQFQYTESRHKIDKFRFVDFARRKRTL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=69435 SR187_RS01230 WP_120171265.1 227618..228331(+) (treR) [Streptococcus ruminantium strain GUT-187]
ATGAAAAAGTATCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTACCTAGCGGAAACTTCCTTGCC
TACAGAACAAGAACTTCAGAAAATTTACGGTGTCAGTCGCGATACTGTTCGTAAGGCCTTAGCCATTTTGACAGAGGGTG
GTCTGATTCAAAAGGTTCAGGGACGTGGCTCCATGGTTCTCAAGCAGGAAATTCTTAACTTTCCTATCTCAGGTCTGACT
TCCTATCAGGAATTAACAGATTCTCTTCAATTATCTACACAGACGAAGGTTGTTCACTTGGATATGATAACGGTTGATTC
TAGCCTTTCCAGTCTGACAGGTTTTGAGACTTACAGTAAGGTATGGAAAGTTATCCGTACACGTTCTATTGATGGAAAAG
TCTCTGTTGTGGATACAGATTATCTTTCTGTAGATGTGGTACCAAAGTTGACGGTGGATGTTGCTGAGAAGTCTATTTAC
GAATATCTGGAAAATGAGCTAGGCCTAGACATAGCATATGCACAAAAGGAAATCACCGTAGAGCCAACCAATCGAGAAGA
ACGCAGATTGTTGAAGGCGCAGGATGACTATTTGGTCTTAATCAAGTCGCGTGTCTATCTCGGTGATACCAAGCAGTTCC
AATACACAGAAAGTAGACACAAGATTGATAAATTCCGCTTTGTGGATTTTGCCCGCAGAAAGCGAACTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.119

99.578

0.519

Multiple sequence alignment