Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY23_RS09925 Genome accession   NZ_CP098195
Coordinates   1994927..1995556 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Z0117EC0098     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1989927..2000556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY23_RS09905 (NBY23_09905) ycbZ 1990317..1992077 (-) 1761 WP_000156526.1 Lon protease family protein -
  NBY23_RS09910 (NBY23_09910) matP 1992263..1992715 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NBY23_RS09915 (NBY23_09915) ompA 1992790..1993842 (-) 1053 WP_000750419.1 porin OmpA -
  NBY23_RS09920 (NBY23_09920) sulA 1994199..1994708 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NBY23_RS09925 (NBY23_09925) sxy/tfoX 1994927..1995556 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY23_RS09930 (NBY23_09930) yccS 1995519..1997681 (-) 2163 WP_000875044.1 YccS family putative transporter -
  NBY23_RS09935 (NBY23_09935) yccF 1997691..1998137 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NBY23_RS09940 (NBY23_09940) helD 1998260..2000314 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=694279 NBY23_RS09925 WP_000839153.1 1994927..1995556(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0098]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694279 NBY23_RS09925 WP_000839153.1 1994927..1995556(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0098]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAGGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1