Detailed information NTG0694274

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: PCK13_RS19920
• Genome accession: NZ_CP115178
• Coordinates: 4090294..4091319 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain B
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4085294..4096319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCK13_RS19890 (PCK13_19880)	zapB	4085378..4085623 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
PCK13_RS19895 (PCK13_19885)	rraA	4085708..4086193 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
PCK13_RS19900 (PCK13_19890)	menA	4086286..4087212 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
PCK13_RS19905 (PCK13_19895)	hslU	4087279..4088610 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
PCK13_RS19910 (PCK13_19900)	hslV	4088620..4089150 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
PCK13_RS19915 (PCK13_19905)	ftsN	4089243..4090202 (-)	960	WP_000068828.1	cell division protein FtsN	-
PCK13_RS19920 (PCK13_19910)	cytR	4090294..4091319 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
PCK13_RS19925 (PCK13_19915)	priA	4091475..4093673 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
PCK13_RS19930 (PCK13_19920)	rpmE	4093876..4094088 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
PCK13_RS19935 (PCK13_19925)	-	4094143..4094766 (-)	624	WP_000720774.1	TIGR02117 family protein	-
PCK13_RS19940 (PCK13_19930)	yiiX	4094773..4095381 (-)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
PCK13_RS19945 (PCK13_19935)	metJ	4095565..4095882 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=694274 PCK13_RS19920 WP_000644904.1 4090294..4091319(-) (cytR) [Escherichia coli strain B]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=694274 PCK13_RS19920 WP_000644904.1 4090294..4091319(-) (cytR) [Escherichia coli strain B]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628