Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PCK13_RS18925 Genome accession   NZ_CP115178
Coordinates   3887414..3888406 (+) Length   330 a.a.
NCBI ID   WP_000224456.1    Uniprot ID   -
Organism   Escherichia coli strain B     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3882414..3893406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCK13_RS18900 (PCK13_18890) rbsD 3882538..3882957 (+) 420 WP_000715936.1 D-ribose pyranase -
  PCK13_RS18905 (PCK13_18895) rbsA 3882965..3884470 (+) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  PCK13_RS18910 (PCK13_18900) rbsC 3884475..3885440 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  PCK13_RS18915 (PCK13_18905) rbsB 3885465..3886355 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  PCK13_RS18920 (PCK13_18910) rbsK 3886481..3887410 (+) 930 WP_012767772.1 ribokinase -
  PCK13_RS18925 (PCK13_18915) cytR 3887414..3888406 (+) 993 WP_000224456.1 ribose operon transcriptional repressor RbsR Regulator
  PCK13_RS18930 (PCK13_18920) mdtD 3888372..3889799 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  PCK13_RS18935 (PCK13_18925) yieP 3889822..3890514 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36563.82 Da        Isoelectric Point: 5.0711

>NTDB_id=694266 PCK13_RS18925 WP_000224456.1 3887414..3888406(+) (cytR) [Escherichia coli strain B]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGDSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=694266 PCK13_RS18925 WP_000224456.1 3887414..3888406(+) (cytR) [Escherichia coli strain B]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTGATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361