Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY24_RS14680 Genome accession   NZ_CP098192
Coordinates   3036467..3037096 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Z0117EC0116     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3031467..3042096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY24_RS14665 (NBY24_14675) helD 3031709..3033763 (-) 2055 WP_000420537.1 DNA helicase IV -
  NBY24_RS14670 (NBY24_14680) yccF 3033886..3034332 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NBY24_RS14675 (NBY24_14685) yccS 3034342..3036504 (+) 2163 WP_000875044.1 YccS family putative transporter -
  NBY24_RS14680 (NBY24_14690) sxy/tfoX 3036467..3037096 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY24_RS14685 (NBY24_14695) sulA 3037315..3037824 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NBY24_RS14690 (NBY24_14700) ompA 3038181..3039233 (+) 1053 WP_001361736.1 porin OmpA -
  NBY24_RS14695 (NBY24_14705) matP 3039309..3039761 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NBY24_RS14700 (NBY24_14710) ycbZ 3039947..3041707 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=694262 NBY24_RS14680 WP_000839153.1 3036467..3037096(-) (sxy/tfoX) [Escherichia coli strain Z0117EC0116]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694262 NBY24_RS14680 WP_000839153.1 3036467..3037096(-) (sxy/tfoX) [Escherichia coli strain Z0117EC0116]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1