Detailed information NTG0694239

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCK13_RS13500
• Genome accession: NZ_CP115178
• Coordinates: 2751768..2752760 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2746768..2757760

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCK13_RS13480 (PCK13_13470)	otnK	2747543..2748805 (+)	1263	WP_000590371.1	3-oxo-tetronate kinase	-
PCK13_RS13485 (PCK13_13475)	ygbL	2748802..2749440 (+)	639	WP_001278994.1	aldolase	-
PCK13_RS13490 (PCK13_13480)	ygbM	2749445..2750221 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
PCK13_RS13495 (PCK13_13485)	ygbN	2750310..2751674 (+)	1365	WP_000104459.1	GntP family transporter	-
PCK13_RS13500 (PCK13_13490)	rpoS	2751768..2752760 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PCK13_RS13505 (PCK13_13495)	nlpD	2752823..2753917 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PCK13_RS13510 (PCK13_13500)	pcm	2754102..2754728 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PCK13_RS13515 (PCK13_13505)	surE	2754722..2755483 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PCK13_RS13520 (PCK13_13510)	truD	2755464..2756513 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PCK13_RS13525 (PCK13_13515)	ispF	2756510..2756989 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCK13_RS13530 (PCK13_13520)	ispD	2756989..2757699 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=694239 PCK13_RS13500 WP_000081550.1 2751768..2752760(-) (rpoS) [Escherichia coli strain B]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=694239 PCK13_RS13500 WP_000081550.1 2751768..2752760(-) (rpoS) [Escherichia coli strain B]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715