Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY25_RS09155 Genome accession   NZ_CP098187
Coordinates   1900420..1901049 (+) Length   209 a.a.
NCBI ID   WP_000839144.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0117     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895420..1906049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY25_RS09135 (NBY25_09125) ycbZ 1895819..1897579 (-) 1761 WP_000156501.1 Lon protease family protein -
  NBY25_RS09140 (NBY25_09130) matP 1897765..1898217 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  NBY25_RS09145 (NBY25_09135) ompA 1898296..1899336 (-) 1041 WP_001350588.1 porin OmpA -
  NBY25_RS09150 (NBY25_09140) sulA 1899692..1900201 (-) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  NBY25_RS09155 (NBY25_09145) sxy/tfoX 1900420..1901049 (+) 630 WP_000839144.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY25_RS09160 (NBY25_09150) yccS 1901012..1903174 (-) 2163 WP_000875041.1 YccS family putative transporter -
  NBY25_RS09165 (NBY25_09155) yccF 1903184..1903630 (-) 447 WP_001261236.1 YccF domain-containing protein -
  NBY25_RS09170 (NBY25_09160) helD 1903753..1905807 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=694230 NBY25_RS09155 WP_000839144.1 1900420..1901049(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0117]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694230 NBY25_RS09155 WP_000839144.1 1900420..1901049(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0117]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995