Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY27_RS07990 Genome accession   NZ_CP098183
Coordinates   1710581..1711210 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Z0117EC0133     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1705581..1716210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY27_RS07970 (NBY27_07970) ycbZ 1705982..1707742 (-) 1761 WP_000156526.1 Lon protease family protein -
  NBY27_RS07975 (NBY27_07975) matP 1707928..1708380 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NBY27_RS07980 (NBY27_07980) ompA 1708456..1709496 (-) 1041 WP_000750416.1 porin OmpA -
  NBY27_RS07985 (NBY27_07985) sulA 1709853..1710362 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NBY27_RS07990 (NBY27_07990) sxy/tfoX 1710581..1711210 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY27_RS07995 (NBY27_07995) yccS 1711173..1713335 (-) 2163 WP_074400328.1 YccS family putative transporter -
  NBY27_RS08000 (NBY27_08000) yccF 1713345..1713791 (-) 447 WP_001261231.1 YccF domain-containing protein -
  NBY27_RS08005 (NBY27_08005) helD 1713914..1715968 (+) 2055 WP_064484850.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=694206 NBY27_RS07990 WP_000839153.1 1710581..1711210(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0133]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694206 NBY27_RS07990 WP_000839153.1 1710581..1711210(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0133]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1