Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY28_RS09005 Genome accession   NZ_CP098178
Coordinates   1861138..1861767 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Z0117EC0148     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1856138..1866767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY28_RS08985 (NBY28_08990) ycbZ 1856539..1858299 (-) 1761 WP_000156526.1 Lon protease family protein -
  NBY28_RS08990 (NBY28_08995) matP 1858485..1858937 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NBY28_RS08995 (NBY28_09000) ompA 1859013..1860053 (-) 1041 WP_000750416.1 porin OmpA -
  NBY28_RS09000 (NBY28_09005) sulA 1860410..1860919 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NBY28_RS09005 (NBY28_09010) sxy/tfoX 1861138..1861767 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NBY28_RS09010 (NBY28_09015) yccS 1861730..1863892 (-) 2163 WP_000875020.1 YccS family putative transporter -
  NBY28_RS09015 (NBY28_09020) yccF 1863902..1864348 (-) 447 WP_001261231.1 YccF domain-containing protein -
  NBY28_RS09020 (NBY28_09025) helD 1864471..1866525 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=694184 NBY28_RS09005 WP_000839153.1 1861138..1861767(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0148]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=694184 NBY28_RS09005 WP_000839153.1 1861138..1861767(+) (sxy/tfoX) [Escherichia coli strain Z0117EC0148]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1