Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY34_RS08985 Genome accession   NZ_CP098165
Coordinates   1921053..1921649 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain Z0117KP0005     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1916053..1926649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY34_RS08965 (NBY34_08965) - 1916245..1918002 (-) 1758 WP_004147851.1 Lon protease family protein -
  NBY34_RS08970 (NBY34_08970) matP 1918188..1918640 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NBY34_RS08975 (NBY34_08975) ompA 1918772..1919842 (-) 1071 WP_002898408.1 porin OmpA -
  NBY34_RS08980 (NBY34_08980) sulA 1920195..1920704 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  NBY34_RS08985 (NBY34_08985) sxy/tfoX 1921053..1921649 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  NBY34_RS08990 (NBY34_08990) yccS 1921663..1923798 (-) 2136 WP_021465041.1 YccS family putative transporter -
  NBY34_RS08995 (NBY34_08995) - 1923816..1924262 (-) 447 WP_002898425.1 YccF domain-containing protein -
  NBY34_RS09000 (NBY34_09000) helD 1924387..1926441 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=694092 NBY34_RS08985 WP_004179217.1 1921053..1921649(+) (sxy/tfoX) [Klebsiella pneumoniae strain Z0117KP0005]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=694092 NBY34_RS08985 WP_004179217.1 1921053..1921649(+) (sxy/tfoX) [Klebsiella pneumoniae strain Z0117KP0005]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51