Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NBY42_RS08875 Genome accession   NZ_CP098154
Coordinates   1872173..1872769 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain Z0117KP0017     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1867173..1877769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY42_RS08850 (NBY42_08850) - 1867365..1869122 (-) 1758 WP_004147851.1 AAA family ATPase -
  NBY42_RS08855 (NBY42_08855) matP 1869308..1869760 (+) 453 WP_032419806.1 macrodomain Ter protein MatP -
  NBY42_RS08860 (NBY42_08860) ompA 1869892..1870962 (-) 1071 WP_002898408.1 porin OmpA -
  NBY42_RS08865 (NBY42_08865) sulA 1871315..1871824 (-) 510 WP_032419807.1 SOS-induced cell division inhibitor SulA -
  NBY42_RS08870 (NBY42_08870) - 1871867..1872082 (-) 216 WP_158236502.1 hypothetical protein -
  NBY42_RS08875 (NBY42_08875) sxy/tfoX 1872173..1872769 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  NBY42_RS08880 (NBY42_08880) yccS 1872783..1874918 (-) 2136 WP_002898422.1 YccS family putative transporter -
  NBY42_RS08885 (NBY42_08885) - 1874936..1875382 (-) 447 WP_002898425.1 YccF domain-containing protein -
  NBY42_RS08890 (NBY42_08890) helD 1875507..1877561 (+) 2055 WP_032419808.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=694020 NBY42_RS08875 WP_004179217.1 1872173..1872769(+) (sxy/tfoX) [Klebsiella pneumoniae strain Z0117KP0017]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=694020 NBY42_RS08875 WP_004179217.1 1872173..1872769(+) (sxy/tfoX) [Klebsiella pneumoniae strain Z0117KP0017]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGTGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51