Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECTOK1_RS04995 Genome accession   NZ_AP018395
Coordinates   1027430..1028059 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain TOK-001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022430..1033059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTOK1_RS04975 (ECTOK1_C09460) ycbZ 1022820..1024580 (-) 1761 WP_000156516.1 Lon protease family protein -
  ECTOK1_RS04980 (ECTOK1_C09470) matP 1024766..1025218 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ECTOK1_RS04985 (ECTOK1_C09480) ompA 1025293..1026345 (-) 1053 WP_001307702.1 porin OmpA -
  ECTOK1_RS04990 (ECTOK1_C09490) sulA 1026702..1027211 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECTOK1_RS04995 (ECTOK1_C09500) sxy/tfoX 1027430..1028059 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECTOK1_RS05000 (ECTOK1_C09510) yccS 1028022..1030184 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ECTOK1_RS05005 (ECTOK1_C09520) yccF 1030194..1030640 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECTOK1_RS05010 (ECTOK1_C09530) helD 1030763..1032817 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=69398 ECTOK1_RS04995 WP_000839153.1 1027430..1028059(+) (sxy/tfoX) [Escherichia coli strain TOK-001]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=69398 ECTOK1_RS04995 WP_000839153.1 1027430..1028059(+) (sxy/tfoX) [Escherichia coli strain TOK-001]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment