Detailed information NTG0693788

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NBY72_RS19995
• Genome accession: NZ_CP098036
• Coordinates: 3729562..3730707 (+)
• Length: 381 a.a.
• NCBI ID: WP_014481226.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SPC-17-3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3724562..3735707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBY72_RS19975 (NBY72_19980)	albF	3724578..3725858 (+)	1281	WP_014481221.1	pitrilysin family protein	-
NBY72_RS19980 (NBY72_19985)	albG	3725855..3726556 (+)	702	WP_014481222.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
NBY72_RS19985 (NBY72_19990)	ywhL	3726562..3727938 (-)	1377	WP_014481223.1	YncE family protein	-
NBY72_RS19990 (NBY72_19995)	ywhK	3727977..3729332 (-)	1356	WP_014481224.1	YncE family protein	-
NBY72_RS22550	-	3729329..3729559 (-)	231	Protein_3884	hypothetical protein	-
NBY72_RS19995 (NBY72_20000)	rapF	3729562..3730707 (+)	1146	WP_014481226.1	response regulator aspartate phosphatase RapF	Regulator
NBY72_RS20000 (NBY72_20005)	phrF	3730691..3730810 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
NBY72_RS20005 (NBY72_20010)	-	3730908..3731335 (+)	428	Protein_3887	YbaK/EbsC family protein	-
NBY72_RS20010 (NBY72_20015)	speB	3731400..3732272 (-)	873	WP_003227545.1	agmatinase	-
NBY72_RS20015 (NBY72_20020)	speE	3732333..3733163 (-)	831	WP_003227543.1	spermidine synthase	-
NBY72_RS20020 (NBY72_20025)	pbpG	3733365..3735440 (+)	2076	WP_014481227.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45627.12 Da
• Isoelectric Point: 5.1503

>NTDB_id=693788 NBY72_RS19995 WP_014481226.1 3729562..3730707(+) (rapF) [Bacillus subtilis strain SPC-17-3]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=693788 NBY72_RS19995 WP_014481226.1 3729562..3730707(+) (rapF) [Bacillus subtilis strain SPC-17-3]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	99.738	100	0.997
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572