Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NBY72_RS18905 Genome accession   NZ_CP098036
Coordinates   3520566..3521255 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain SPC-17-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3515566..3526255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY72_RS18870 (NBY72_18870) flgN 3515746..3516228 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NBY72_RS18875 (NBY72_18875) flgM 3516244..3516510 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  NBY72_RS18880 (NBY72_18880) yvyF 3516591..3517010 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  NBY72_RS18885 (NBY72_18885) comFC 3517083..3517805 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  NBY72_RS18890 (NBY72_18890) comFB 3517769..3518065 (-) 297 WP_003227989.1 late competence protein ComFB -
  NBY72_RS18895 (NBY72_18895) comFA 3518125..3519516 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NBY72_RS18900 (NBY72_18900) fakBA 3519623..3520468 (-) 846 WP_014481053.1 DegV family protein -
  NBY72_RS18905 (NBY72_18905) degU 3520566..3521255 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  NBY72_RS18910 (NBY72_18910) degS 3521338..3522495 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NBY72_RS18915 (NBY72_18915) - 3522712..3523365 (+) 654 WP_014481055.1 YigZ family protein -
  NBY72_RS18920 (NBY72_18920) - 3523365..3524357 (+) 993 WP_014481056.1 LCP family protein -
  NBY72_RS18925 (NBY72_18925) - 3524955..3525419 (+) 465 WP_225910700.1 hypothetical protein -
  NBY72_RS18930 (NBY72_18930) - 3525468..3525923 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=693783 NBY72_RS18905 WP_014481054.1 3520566..3521255(-) (degU) [Bacillus subtilis strain SPC-17-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=693783 NBY72_RS18905 WP_014481054.1 3520566..3521255(-) (degU) [Bacillus subtilis strain SPC-17-3]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996