Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NBY72_RS16260 Genome accession   NZ_CP098036
Coordinates   3027821..3028465 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SPC-17-3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022821..3033465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY72_RS16225 (NBY72_16225) mrpB 3024013..3024444 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NBY72_RS16230 (NBY72_16230) mrpC 3024444..3024785 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  NBY72_RS16235 (NBY72_16235) mrpD 3024778..3026259 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  NBY72_RS16240 (NBY72_16240) mrpE 3026265..3026741 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NBY72_RS16245 (NBY72_16245) mrpF 3026741..3027025 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NBY72_RS16250 (NBY72_16250) mnhG 3027009..3027383 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NBY72_RS16255 (NBY72_16255) yuxO 3027422..3027802 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  NBY72_RS16260 (NBY72_16260) comA 3027821..3028465 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NBY72_RS16265 (NBY72_16265) comP 3028546..3030858 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  NBY72_RS16270 (NBY72_16270) comX 3030874..3031095 (-) 222 WP_014480704.1 competence pheromone ComX -
  NBY72_RS16275 (NBY72_16275) - 3031097..3031960 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  NBY72_RS16280 (NBY72_16280) degQ 3032145..3032285 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NBY72_RS16285 (NBY72_16285) - 3032507..3032632 (+) 126 WP_003228793.1 hypothetical protein -
  NBY72_RS16290 (NBY72_16290) - 3032746..3033114 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=693775 NBY72_RS16260 WP_003220716.1 3027821..3028465(-) (comA) [Bacillus subtilis strain SPC-17-3]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=693775 NBY72_RS16260 WP_003220716.1 3027821..3028465(-) (comA) [Bacillus subtilis strain SPC-17-3]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1