Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NBY72_RS11450 Genome accession   NZ_CP098036
Coordinates   2142900..2143520 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain SPC-17-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2137900..2148520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY72_RS11410 (NBY72_11410) ptsA 2139032..2139538 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  NBY72_RS11415 (NBY72_11415) ypqA 2139676..2140095 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  NBY72_RS11420 (NBY72_11420) sppG 2140116..2140493 (-) 378 WP_004398696.1 YppG family protein -
  NBY72_RS11425 (NBY72_11425) yppF 2140680..2140868 (+) 189 WP_003230690.1 YppF family protein -
  NBY72_RS11430 (NBY72_11430) yppE 2140907..2141278 (-) 372 WP_003246080.1 YppE family protein -
  NBY72_RS11435 (NBY72_11435) yppD 2141324..2141569 (-) 246 WP_004398488.1 YppD family protein -
  NBY72_RS11440 (NBY72_11440) sspM 2141768..2141872 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NBY72_RS11445 (NBY72_11445) yppC 2141897..2142859 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  NBY72_RS11450 (NBY72_11450) recU 2142900..2143520 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  NBY72_RS11455 (NBY72_11455) ponA 2143542..2146286 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  NBY72_RS11460 (NBY72_11460) ypoC 2146362..2146856 (-) 495 WP_009967579.1 YpoC family protein -
  NBY72_RS11465 (NBY72_11465) nth 2146853..2147512 (-) 660 WP_009967580.1 endonuclease III -
  NBY72_RS11470 (NBY72_11470) dnaD 2147531..2148229 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=693750 NBY72_RS11450 WP_014480105.1 2142900..2143520(+) (recU) [Bacillus subtilis strain SPC-17-3]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=693750 NBY72_RS11450 WP_014480105.1 2142900..2143520(+) (recU) [Bacillus subtilis strain SPC-17-3]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995