Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NAL94_RS22265 Genome accession   NZ_CP098034
Coordinates   3003976..3004983 (+) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain E110     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2998976..3009983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL94_RS22245 (NAL94_22250) rplC 2999518..3000147 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  NAL94_RS22250 (NAL94_22255) rpsJ 3000162..3000473 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  NAL94_RS22255 (NAL94_22260) rpmE 3000930..3001151 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  NAL94_RS22260 (NAL94_22265) priA 3001448..3003652 (+) 2205 WP_169628328.1 primosomal protein N' -
  NAL94_RS22265 (NAL94_22270) cytR 3003976..3004983 (+) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  NAL94_RS22270 (NAL94_22275) ftsN 3005209..3005757 (+) 549 WP_017820300.1 cell division protein FtsN -
  NAL94_RS22275 (NAL94_22280) hslV 3005873..3006424 (+) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  NAL94_RS22280 (NAL94_22285) hslU 3006448..3007779 (+) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -
  NAL94_RS22285 (NAL94_22290) - 3008905..3009822 (+) 918 WP_005383178.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=693706 NAL94_RS22265 WP_005379543.1 3003976..3004983(+) (cytR) [Vibrio alginolyticus strain E110]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=693706 NAL94_RS22265 WP_005379543.1 3003976..3004983(+) (cytR) [Vibrio alginolyticus strain E110]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGTTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCTGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCAAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893