Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NAL94_RS17305 Genome accession   NZ_CP098034
Coordinates   1921385..1922806 (+) Length   473 a.a.
NCBI ID   WP_132936599.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain E110     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916385..1927806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL94_RS17285 (NAL94_17290) - 1916867..1917673 (-) 807 WP_047100704.1 adenosylcobinamide-GDP ribazoletransferase -
  NAL94_RS17290 (NAL94_17295) cobT 1917673..1918716 (-) 1044 WP_047100705.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  NAL94_RS17295 (NAL94_17300) - 1918965..1919654 (+) 690 WP_047100706.1 NAD(P)H-binding protein -
  NAL94_RS17300 (NAL94_17305) - 1919855..1921228 (+) 1374 WP_047100707.1 L-cystine transporter -
  NAL94_RS17305 (NAL94_17310) sbcB 1921385..1922806 (+) 1422 WP_132936599.1 exodeoxyribonuclease I Machinery gene
  NAL94_RS17310 (NAL94_17315) - 1922862..1923236 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  NAL94_RS17315 (NAL94_17320) - 1923238..1923915 (+) 678 WP_005377888.1 LrgB family protein -
  NAL94_RS17320 (NAL94_17325) cdd 1924347..1925234 (+) 888 WP_005377892.1 cytidine deaminase -
  NAL94_RS17325 (NAL94_17330) purT 1925378..1926553 (+) 1176 WP_053303163.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  NAL94_RS17330 (NAL94_17335) - 1926626..1927276 (-) 651 WP_021707633.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54430.62 Da        Isoelectric Point: 4.8633

>NTDB_id=693696 NAL94_RS17305 WP_132936599.1 1921385..1922806(+) (sbcB) [Vibrio alginolyticus strain E110]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=693696 NAL94_RS17305 WP_132936599.1 1921385..1922806(+) (sbcB) [Vibrio alginolyticus strain E110]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797