Detailed information NTG0693683

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NAL94_RS10585
• Genome accession: NZ_CP098034
• Coordinates: 551469..552455 (+)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain E110
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 546469..557455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NAL94_RS10550 (NAL94_10550)	ftsB	546479..546760 (+)	282	WP_005380907.1	cell division protein FtsB	-
NAL94_RS10555 (NAL94_10555)	ispD	546762..547469 (+)	708	WP_169628509.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NAL94_RS10560 (NAL94_10560)	ispF	547484..547960 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NAL94_RS10565 (NAL94_10565)	truD	548006..549049 (+)	1044	WP_017821624.1	tRNA pseudouridine(13) synthase TruD	-
NAL94_RS10570 (NAL94_10570)	surE	549049..549825 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
NAL94_RS10575 (NAL94_10575)	-	549825..550451 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NAL94_RS10580 (NAL94_10580)	-	550465..551388 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
NAL94_RS10585 (NAL94_10585)	rpoS	551469..552455 (+)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
NAL94_RS10590 (NAL94_10590)	mutS	552538..555099 (-)	2562	WP_104979687.1	DNA mismatch repair protein MutS	-
NAL94_RS10595 (NAL94_10595)	pncC	555184..555666 (+)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
NAL94_RS10600 (NAL94_10600)	recA	555867..556910 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=693683 NAL94_RS10585 WP_005380887.1 551469..552455(+) (rpoS) [Vibrio alginolyticus strain E110]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=693683 NAL94_RS10585 WP_005380887.1 551469..552455(+) (rpoS) [Vibrio alginolyticus strain E110]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTTGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854