Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   NAL94_RS00080 Genome accession   NZ_CP098033
Coordinates   15853..17034 (-) Length   393 a.a.
NCBI ID   WP_005376522.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain E110     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 10853..22034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL94_RS00065 (NAL94_00065) - 12085..12633 (+) 549 WP_005376525.1 GNAT family N-acetyltransferase -
  NAL94_RS00070 (NAL94_00070) - 12723..13340 (-) 618 WP_005376524.1 HAD family hydrolase -
  NAL94_RS00075 (NAL94_00075) cqsS 13704..15749 (+) 2046 WP_005376523.1 hybrid sensor histidine kinase/response regulator Regulator
  NAL94_RS00080 (NAL94_00080) cqsA 15853..17034 (-) 1182 WP_005376522.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  NAL94_RS00085 (NAL94_00085) ylqF 17372..18316 (-) 945 WP_054866316.1 ribosome biogenesis GTPase YlqF -
  NAL94_RS00090 (NAL94_00090) - 19143..19640 (-) 498 WP_206225667.1 ribbon-helix-helix protein, CopG family -
  NAL94_RS00095 (NAL94_00095) - 19825..20928 (+) 1104 WP_206225668.1 Rrf2 family transcriptional regulator -
  NAL94_RS00100 (NAL94_00100) - 21147..21914 (+) 768 WP_206225669.1 inovirus Gp2 family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43639.85 Da        Isoelectric Point: 6.3840

>NTDB_id=693667 NAL94_RS00080 WP_005376522.1 15853..17034(-) (cqsA) [Vibrio alginolyticus strain E110]
MSETIQSKPLPSFIEERLDFYIQDLIEPNENKKHLVLGKRPPCNAVVLQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTS
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGILQGLGLTHKVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIRKSDDKRDILFERAKSLAVGLKRIGFTIRSESQ
IISLECGNERNTERVRDFLEERNVYGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLTVCQQAFAHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=693667 NAL94_RS00080 WP_005376522.1 15853..17034(-) (cqsA) [Vibrio alginolyticus strain E110]
ATGAGTGAAACTATACAAAGCAAACCACTTCCCTCCTTTATCGAGGAACGCCTAGATTTTTATATTCAAGATCTAATCGA
ACCGAATGAGAACAAAAAACACCTTGTTCTTGGTAAACGCCCACCGTGTAATGCCGTTGTCCTGCAAAGCAATGATTACC
TTGCACTGTCTCATAATAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCCCAGCACGATGACAACGTCGTGATGTCC
GCGATTTTCTTACAAGATGATGAATCGAAACCTGCATTTGAAACGCAACTAGCCAGTTTCGTTGGTATGCCTAGTTGTCT
ACTTTCTCAATCTGGTTGGGCTGCGAATGTCGGTTTATTGCAGACTATTTGTGCACCGAACATACCTGTGTACATTGATT
TCTTTGCACATATGTCTTTGTGGGAAGGCGCACGTATTGCCGGAGCACAAATTCATCCGTTCATGCATAACAACACCAGT
CACCTAAGAAAGCAGATTTCACGTCACGGTTCAGGGATCATTGTTGTGGATTCGGTTTACAGCACTATCGGGACCATCGC
TCCTCTACGTGATATCTACGAAATAGCACAGGAGTTTGACTGCGGCCTGGTTGTAGATGAATCACACTCTTTAGGTACAC
ACGGTCCACAAGGTGCGGGGATACTGCAGGGTCTTGGCTTAACTCATAAGGTAGATTTTATTACCGTTAGTCTTGCCAAG
ACATTTGCTTATCGTGCTGGCGCGATTTTAGGCCCAGAAAAACTGGCGAAGACGCTTCCGTTTGTGGCGTACCCTGCAAT
ATTTAGTTCTACCGTATTACCGCAAGAGATCATTCGGCTAGAGAAAACACTGGACGTCATAAGAAAATCAGATGATAAGC
GAGATATTCTGTTTGAAAGAGCCAAGTCTTTAGCCGTTGGTTTAAAACGCATTGGATTTACTATTCGCAGTGAATCACAA
ATTATCTCATTAGAATGCGGCAACGAGAGAAACACTGAGCGAGTCCGCGATTTTCTCGAAGAGCGAAATGTTTACGGCGC
AGTGTTTTGCCGCCCTGCAACTGGAAGGAACAAAAACATCATCCGTTTTTCAGTCAATGCCGACATGACAGCTGCTGAAG
TTGATCATGTACTCACTGTCTGCCAACAAGCATTTGCACACCCTGACTTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567