Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NBX27_RS01825 Genome accession   NZ_CP098031
Coordinates   390305..392104 (+) Length   599 a.a.
NCBI ID   WP_250659130.1    Uniprot ID   -
Organism   Erysipelothrix rhusiopathiae strain 319078     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 385305..397104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBX27_RS01780 (NBX27_01780) gatB 385796..387211 (+) 1416 WP_003775549.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  NBX27_RS01785 (NBX27_01785) - 387250..387927 (+) 678 WP_003775548.1 hypothetical protein -
  NBX27_RS01790 (NBX27_01790) - 388017..389225 (+) 1209 WP_003775547.1 O-antigen ligase family protein -
  NBX27_RS01825 (NBX27_01825) pepF 390305..392104 (+) 1800 WP_250659130.1 oligoendopeptidase F Regulator
  NBX27_RS01830 (NBX27_01830) - 392162..392554 (-) 393 WP_003775545.1 CoA-binding protein -
  NBX27_RS01835 (NBX27_01835) - 392551..393153 (-) 603 WP_250659131.1 dienelactone hydrolase family protein -
  NBX27_RS01840 (NBX27_01840) - 393224..395101 (-) 1878 WP_238000250.1 BglG family transcription antiterminator -
  NBX27_RS01845 (NBX27_01845) - 395165..395983 (-) 819 WP_003775540.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  NBX27_RS01850 (NBX27_01850) - 395976..396746 (-) 771 WP_003775537.1 PTS sugar transporter subunit IIC -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68622.38 Da        Isoelectric Point: 4.3664

>NTDB_id=693660 NBX27_RS01825 WP_250659130.1 390305..392104(+) (pepF) [Erysipelothrix rhusiopathiae strain 319078]
MSDKYELPLRSEVDIKDTWDLTPMFKDDDAWNTEFDAIQNDLSEVAAYRGTLTKSAESLLAGLKFRDELSYRIEFLYVYA
HLSFDVDTTNPKYQAMNARVQSLLAQFGSSFSFYEAEILSADETVIREYLESNEALSLYNHEFDRLFKSRPHILSEKEER
ILASSGEIFGVSSQTFGMLNNADIQFPTIKDESGNDVQLSHGRYSLLMESADRRVREDAFKAMQTTYGNLKNTLASTLSG
NVKVHNFNATIRNYASARQAALAANNIDEEVYDSLLEGIHNNINLLHDYVALREEALGIDDIQMYDIYVPMVDEVDLKFT
YEEAQEVILDALSVLGEEYCAVLKRAFDERWIDVVENKGKRSGAYSSGTYGSAPYILLNWQENIDNVFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKVRAYLLNHYLDTVKGTVFRQTQFAEFEHLIHKSDQEGV
ALTADYLIESYYKLNQFYYGESISTEEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLDFLKSGSSD
YPINVLRKAGVDMTESTAVDTTLEKFGERMAELRTLLVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=693660 NBX27_RS01825 WP_250659130.1 390305..392104(+) (pepF) [Erysipelothrix rhusiopathiae strain 319078]
ATGTCGGATAAATATGAATTACCACTTCGTAGTGAAGTGGATATAAAAGATACATGGGATTTAACACCGATGTTTAAAGA
TGATGACGCATGGAATACAGAATTTGATGCGATTCAAAATGACTTAAGTGAAGTGGCTGCATACCGTGGTACTTTAACGA
AAAGCGCTGAAAGTTTGTTAGCGGGTCTTAAGTTTCGTGATGAATTAAGTTATCGTATTGAGTTTTTATATGTTTATGCA
CATTTAAGTTTTGATGTCGATACCACAAACCCTAAGTATCAAGCAATGAATGCGCGCGTGCAATCGCTTCTTGCGCAATT
TGGATCAAGTTTTTCGTTCTATGAAGCAGAGATTTTATCTGCCGATGAAACTGTTATTCGAGAATATCTTGAATCGAATG
AAGCGCTCAGTTTATATAATCATGAATTTGATCGTCTTTTCAAATCAAGACCACATATTCTTAGTGAAAAAGAAGAACGT
ATTCTTGCCTCATCAGGAGAAATCTTTGGTGTTTCTTCGCAGACATTTGGCATGTTGAATAATGCAGATATTCAATTCCC
TACAATTAAAGATGAATCGGGAAATGATGTTCAATTATCACACGGTCGTTATTCACTGTTAATGGAAAGTGCAGATCGAC
GTGTTCGTGAAGATGCTTTCAAAGCGATGCAAACAACTTATGGTAATTTAAAGAATACTCTTGCAAGTACGCTGTCGGGA
AATGTTAAGGTTCATAATTTCAATGCAACAATCCGTAATTATGCGTCGGCTCGTCAAGCTGCTCTTGCCGCAAATAATAT
TGACGAAGAAGTTTATGATTCCCTTTTAGAAGGAATTCATAATAATATTAACTTACTGCATGATTATGTAGCCCTTCGTG
AAGAGGCATTGGGTATTGATGATATTCAAATGTATGATATTTATGTCCCAATGGTTGATGAAGTGGATTTGAAGTTTACG
TATGAAGAAGCACAAGAAGTGATTTTGGACGCATTGAGTGTTCTTGGAGAAGAATATTGTGCTGTGTTGAAACGTGCCTT
TGATGAACGCTGGATTGATGTTGTTGAGAATAAAGGAAAACGATCGGGAGCTTATTCTTCAGGTACTTATGGAAGTGCAC
CGTATATTCTTTTAAACTGGCAAGAAAATATAGATAATGTGTTTACTCTTGCTCATGAGCTTGGACACAGTGTTCACTCG
TACTTTACGCGTAAGTATCAACCTTATATTTACGGAGATTATTCTATTTTTGTTGCTGAAGTTGCTTCCACAACGAATGA
GAATTTGCTGTTGAATTATTTGTTGGATCAATATGAGGATCCAAAGGTTCGTGCTTACTTGTTGAATCACTATTTAGACA
CGGTTAAAGGCACGGTGTTCCGTCAAACGCAGTTTGCTGAGTTTGAACACCTTATTCATAAATCAGACCAAGAGGGCGTT
GCTTTAACGGCTGATTATCTGATTGAGTCTTACTATAAACTCAATCAATTCTATTATGGTGAATCAATCAGCACTGAAGA
AATTGGTTATGAGTGGGCACGCATCCCTCATTTCTACTACAATTACTATGTTTACCAATATGCTACAGGATTTAGTGCAG
CAACTTTATTCAGTGAAACAATATATAATGGTGGTGATGCGACACCTTATCTTGATTTCTTGAAGTCAGGAAGTTCGGAT
TATCCTATTAATGTCCTTCGTAAGGCGGGCGTGGATATGACTGAATCGACTGCTGTTGATACTACGCTTGAGAAATTTGG
CGAACGTATGGCTGAATTACGAACATTACTTGTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-582)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.241

98.998

0.487