Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NAG05_RS04505 Genome accession   NZ_CP098025
Coordinates   886192..887865 (+) Length   557 a.a.
NCBI ID   WP_016622703.1    Uniprot ID   -
Organism   Enterococcus faecalis strain QZ076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 881192..892865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG05_RS04475 (NAG05_04475) - 881443..882288 (+) 846 WP_002363394.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  NAG05_RS04480 (NAG05_04480) xseA 882298..883644 (+) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  NAG05_RS04485 (NAG05_04485) - 883646..883876 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  NAG05_RS04490 (NAG05_04490) - 883876..884757 (+) 882 WP_016622704.1 polyprenyl synthetase family protein -
  NAG05_RS04495 (NAG05_04495) - 884771..885586 (+) 816 WP_002363395.1 TlyA family RNA methyltransferase -
  NAG05_RS04500 (NAG05_04500) - 885725..886174 (+) 450 WP_002363397.1 ArgR family transcriptional regulator -
  NAG05_RS04505 (NAG05_04505) recN 886192..887865 (+) 1674 WP_016622703.1 DNA repair protein RecN Machinery gene
  NAG05_RS04510 (NAG05_04510) - 887956..888066 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  NAG05_RS04515 (NAG05_04515) - 888134..889099 (-) 966 WP_002387038.1 magnesium transporter CorA family protein -
  NAG05_RS04520 (NAG05_04520) - 889344..889736 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  NAG05_RS04525 (NAG05_04525) mraZ 889970..890455 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  NAG05_RS04530 (NAG05_04530) rsmH 890470..891426 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  NAG05_RS04535 (NAG05_04535) ftsL 891443..891850 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62626.07 Da        Isoelectric Point: 4.5967

>NTDB_id=693613 NAG05_RS04505 WP_016622703.1 886192..887865(+) (recN) [Enterococcus faecalis strain QZ076]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAKKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=693613 NAG05_RS04505 WP_016622703.1 886192..887865(+) (recN) [Enterococcus faecalis strain QZ076]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGAGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCTTACTATTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGATGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATTACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGCGA
CTTAGAAGCGTTGCTTGCAAAGAAACAACAAGCGGCTCATCAACAAGCATTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTTGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGCCGTGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATTGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCACGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.421

100

0.496