Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   NAF16_RS17680 Genome accession   NZ_CP098022
Coordinates   588838..589935 (+) Length   365 a.a.
NCBI ID   WP_024375537.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 546881..588627 588838..589935 flank 211


Gene organization within MGE regions


Location: 546881..589935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS17430 (NAF16_17400) - 546881..548767 (-) 1887 WP_323695579.1 hypothetical protein -
  NAF16_RS17435 - 548796..548903 (-) 108 WP_283513889.1 GpE family phage tail protein -
  NAF16_RS17440 (NAF16_17405) - 548939..549226 (-) 288 WP_323695580.1 phage tail assembly protein -
  NAF16_RS17445 (NAF16_17410) gpM 549210..549917 (-) 708 WP_222729340.1 phage terminase small subunit -
  NAF16_RS17450 (NAF16_17415) - 549928..550293 (-) 366 WP_004726844.1 phage tail tube protein -
  NAF16_RS17455 (NAF16_17420) - 550297..551430 (-) 1134 WP_222760802.1 phage tail sheath subtilisin-like domain-containing protein -
  NAF16_RS17460 (NAF16_17425) - 551427..551609 (-) 183 WP_222760803.1 DUF2635 domain-containing protein -
  NAF16_RS17465 (NAF16_17430) - 551610..552149 (-) 540 WP_222760804.1 phage virion morphogenesis protein -
  NAF16_RS17470 (NAF16_17435) - 552146..552610 (-) 465 WP_323695581.1 phage tail protein -
  NAF16_RS17475 (NAF16_17440) - 552610..553059 (-) 450 WP_323695582.1 head completion/stabilization protein -
  NAF16_RS17480 (NAF16_17445) - 553168..554205 (-) 1038 WP_104964920.1 phage major capsid protein, P2 family -
  NAF16_RS17485 (NAF16_17450) - 554248..555081 (-) 834 WP_323695583.1 GPO family capsid scaffolding protein -
  NAF16_RS17490 (NAF16_17455) - 555252..556976 (+) 1725 WP_390370058.1 terminase large subunit domain-containing protein -
  NAF16_RS17495 (NAF16_17460) - 556987..557952 (+) 966 WP_323695585.1 phage portal protein -
  NAF16_RS17500 (NAF16_17465) - 558333..559655 (+) 1323 WP_323695586.1 hypothetical protein -
  NAF16_RS17505 (NAF16_17470) - 559874..560527 (-) 654 WP_323695587.1 KilA-N domain-containing protein -
  NAF16_RS17510 (NAF16_17475) - 561110..561688 (+) 579 WP_323695588.1 hypothetical protein -
  NAF16_RS17515 (NAF16_17480) - 561814..562116 (+) 303 WP_233959393.1 hypothetical protein -
  NAF16_RS17520 (NAF16_17485) - 562259..562690 (+) 432 WP_323695589.1 GFA family protein -
  NAF16_RS17525 (NAF16_17490) - 562784..563035 (-) 252 WP_004726819.1 hypothetical protein -
  NAF16_RS17530 (NAF16_17495) - 563026..563256 (-) 231 WP_004726817.1 hypothetical protein -
  NAF16_RS17535 (NAF16_17500) - 563267..563683 (-) 417 WP_323695590.1 glycoside hydrolase family protein -
  NAF16_RS17540 (NAF16_17505) - 563845..564492 (+) 648 WP_323695591.1 acyltransferase -
  NAF16_RS17545 (NAF16_17510) - 564608..565537 (-) 930 WP_323695592.1 hypothetical protein -
  NAF16_RS17550 (NAF16_17515) - 565537..566631 (-) 1095 WP_323695593.1 tail fiber protein -
  NAF16_RS17555 (NAF16_17520) - 566628..567107 (-) 480 WP_323695594.1 hypothetical protein -
  NAF16_RS17560 (NAF16_17525) - 567089..568135 (-) 1047 WP_323695595.1 baseplate J/gp47 family protein -
  NAF16_RS17565 (NAF16_17530) - 568132..568518 (-) 387 WP_222750667.1 phage GP46 family protein -
  NAF16_RS17570 (NAF16_17535) - 568515..569090 (-) 576 WP_323695596.1 phage baseplate assembly protein V -
  NAF16_RS17575 (NAF16_17540) - 569083..570021 (-) 939 WP_323695597.1 phage tail protein -
  NAF16_RS17580 (NAF16_17545) - 570018..571208 (-) 1191 WP_323695598.1 DNA circularization N-terminal domain-containing protein -
  NAF16_RS17585 - 571995..572354 (-) 360 WP_038151570.1 terminase large subunit domain-containing protein -
  NAF16_RS17590 (NAF16_17550) - 572600..572851 (-) 252 WP_004726797.1 ogr/Delta-like zinc finger family protein -
  NAF16_RS17595 (NAF16_17555) - 572861..575491 (-) 2631 WP_323695599.1 replication endonuclease -
  NAF16_RS17600 (NAF16_17560) - 575488..576333 (-) 846 WP_172557203.1 DNA adenine methylase -
  NAF16_RS17605 (NAF16_17565) - 576330..576557 (-) 228 WP_075990099.1 hypothetical protein -
  NAF16_RS17610 (NAF16_17570) - 576539..576850 (-) 312 WP_020433788.1 hypothetical protein -
  NAF16_RS17615 (NAF16_17575) - 576923..577255 (-) 333 WP_323695600.1 hypothetical protein -
  NAF16_RS17620 (NAF16_17580) - 577265..577804 (-) 540 WP_014257423.1 phage regulatory CII family protein -
  NAF16_RS17625 (NAF16_17585) - 577862..578320 (-) 459 WP_004726785.1 hypothetical protein -
  NAF16_RS17630 (NAF16_17590) - 578471..579196 (+) 726 WP_171934179.1 S24 family peptidase -
  NAF16_RS17635 (NAF16_17595) - 579274..581430 (+) 2157 WP_233933256.1 ATP-binding protein -
  NAF16_RS17640 (NAF16_17600) - 581427..582851 (+) 1425 WP_233933257.1 hypothetical protein -
  NAF16_RS17645 (NAF16_17605) - 582838..584376 (-) 1539 WP_233933258.1 DNA cytosine methyltransferase -
  NAF16_RS17650 (NAF16_17610) - 584550..585518 (+) 969 WP_233933259.1 tyrosine-type recombinase/integrase -
  NAF16_RS17655 (NAF16_17615) - 585680..585997 (-) 318 WP_020329287.1 DUF496 family protein -
  NAF16_RS17660 (NAF16_17620) - 586187..586384 (+) 198 WP_020329288.1 hypothetical protein -
  NAF16_RS17665 (NAF16_17625) - 586429..587064 (+) 636 WP_020433719.1 YceH family protein -
  NAF16_RS17670 (NAF16_17630) - 587075..587356 (+) 282 WP_143682552.1 GIY-YIG nuclease family protein -
  NAF16_RS17675 (NAF16_17635) traF 587470..588627 (+) 1158 WP_323695602.1 conjugal transfer protein TraF -
  NAF16_RS17680 (NAF16_17640) luxP 588838..589935 (+) 1098 WP_024375537.1 autoinducer 2-binding periplasmic protein LuxP Regulator

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41555.79 Da        Isoelectric Point: 5.0163

>NTDB_id=693573 NAF16_RS17680 WP_024375537.1 588838..589935(+) (luxP) [Vibrio fluvialis strain V13]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALNEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDSSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=693573 NAF16_RS17680 WP_024375537.1 588838..589935(+) (luxP) [Vibrio fluvialis strain V13]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAGAAGACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGGCTGAATGTCAAACAGAGCAAGCCTGTGACCATTTCGGTCGTCTACCCGGGCCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGCTGGGGATTGAGTACCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCACTGAAAAACAACACCGATTATCTGATCTTTA
CTCTCGACACTACGCGTCACCGCAAGTTTATCGAGCATGTTCTCAGCTCTTCTCCAACCAAATTGATTCTTCAGAACATC
ACCACTCCGGTCAGAGATTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGCGCGCAGCAACT
GGCGCAGTATTACCGCGAACACGTGCCTAAAGGCAGTAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGTGACG
CACGGGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCCACT
CAGGAGAGCGGCTACGAAGCAACGCTCAACATTCTGAAAAACGATCCGGACATCAAATTTATTTATGCCTGTTCAACGGA
CGTGGCACTGGGCGCCGCACAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTGAACGGCTGGGGCGGTGGCTCGG
CAGAGCTTGAAGCGCTGAATGAAGGGCATCTGGATGTGACCGTGATGCGCATCAACGACGATACGGGTATTGCAATGGCG
GAAGCCATCAAACGCGACCTTGAAGGCGAGGCGGTGCCAGTGGTCTATTCCGGCGACTTTGAGATTGTCACCAAAGAAGA
TAGTTCGCAAAAAATCGATGTATTTAAGCAACGAGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.685

100

0.707