Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NAF16_RS11850 Genome accession   NZ_CP098021
Coordinates   2520833..2521351 (-) Length   172 a.a.
NCBI ID   WP_222749249.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2515833..2526351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS11825 (NAF16_11800) rimM 2515956..2516510 (-) 555 WP_020330455.1 ribosome maturation factor RimM -
  NAF16_RS11830 (NAF16_11805) rpsP 2516538..2516786 (-) 249 WP_020330454.1 30S ribosomal protein S16 -
  NAF16_RS11835 (NAF16_11810) ffh 2517011..2518393 (-) 1383 WP_020330453.1 signal recognition particle protein -
  NAF16_RS11840 (NAF16_11815) - 2518606..2519400 (+) 795 WP_020330452.1 inner membrane protein YpjD -
  NAF16_RS11845 (NAF16_11820) - 2519490..2520764 (+) 1275 WP_020330450.1 HlyC/CorC family transporter -
  NAF16_RS11850 (NAF16_11825) luxS 2520833..2521351 (-) 519 WP_222749249.1 S-ribosylhomocysteine lyase Regulator
  NAF16_RS11855 (NAF16_11830) - 2521377..2521982 (-) 606 WP_222797896.1 hypothetical protein -
  NAF16_RS11860 (NAF16_11835) gshA 2521984..2523549 (-) 1566 WP_323694789.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18939.90 Da        Isoelectric Point: 5.5627

>NTDB_id=693557 NAF16_RS11850 WP_222749249.1 2520833..2521351(-) (luxS) [Vibrio fluvialis strain V13]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVITAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=693557 NAF16_RS11850 WP_222749249.1 2520833..2521351(-) (luxS) [Vibrio fluvialis strain V13]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGTATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACTATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCAAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGTCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCTTGGTTGGCTGC
GATGCAAGATGTTCTGAAGGTGGAAAGTCAGGACAAGATTCCTGAACTGAACGAATACCAGTGTGGTACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTACCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.698

100

0.907