Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NAF16_RS07850 Genome accession   NZ_CP098021
Coordinates   1670500..1671924 (+) Length   474 a.a.
NCBI ID   WP_044362848.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1665500..1676924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS07825 (NAF16_07830) cobT 1665670..1666698 (-) 1029 WP_222773615.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  NAF16_RS07830 (NAF16_07835) - 1666712..1667323 (-) 612 WP_222767265.1 flavin reductase family protein -
  NAF16_RS07835 (NAF16_07840) - 1667708..1668391 (+) 684 WP_323694607.1 NAD(P)H-binding protein -
  NAF16_RS07840 (NAF16_07845) - 1668592..1669971 (+) 1380 WP_032081664.1 L-cystine transporter -
  NAF16_RS07845 (NAF16_07850) - 1670050..1670262 (-) 213 WP_323694608.1 hypothetical protein -
  NAF16_RS07850 (NAF16_07855) sbcB 1670500..1671924 (+) 1425 WP_044362848.1 exodeoxyribonuclease I Machinery gene
  NAF16_RS07855 (NAF16_07860) - 1671965..1672339 (+) 375 WP_020327588.1 CidA/LrgA family protein -
  NAF16_RS07860 (NAF16_07865) - 1672330..1673010 (+) 681 WP_143682366.1 LrgB family protein -
  NAF16_RS07865 (NAF16_07870) cdd 1673212..1674099 (+) 888 WP_323694609.1 cytidine deaminase -
  NAF16_RS07870 (NAF16_07875) - 1674146..1676854 (-) 2709 WP_323694610.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54416.83 Da        Isoelectric Point: 5.1493

>NTDB_id=693546 NAF16_RS07850 WP_044362848.1 1670500..1671924(+) (sbcB) [Vibrio fluvialis strain V13]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIDPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=693546 NAF16_RS07850 WP_044362848.1 1670500..1671924(+) (sbcB) [Vibrio fluvialis strain V13]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGATATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCAG
ATTATCTGCCAGCGCCTGAAGCCGCGCTGATCACTGGCATCATTCCGCAAAAAGCGATGGCACAAGGGCTGTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCGGAGCTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTATCGCAACTTTCTCGATCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
GACCATTGAACTGGCGAAAAAAGTCAAAGCGGCACAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCAACCAATCAGAACGCTGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCTGTCAAACTGGTTCACCTCAATAAATGCCCGATTCTGGCACCGGCTAAAACGCTGACCGCAGAAAATGCCGCC
ACCATCGGTATTGACCGCGAATTGTGTCTGGCAAATCTGGCTCGCATTCGTCAACATCCGGAAATTCGAGAGAAGCTGGC
CGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAACTCTATGACGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCGACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAG
CGCATCGATCCGCTGCTGTTTCGCTATCGCGCACGTAATTTCCCTTGGACGCTGGATGAAAATGACCAGCGTCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.298

99.789

0.831