Detailed information NTG0693544

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: NAF16_RS01940
• Genome accession: NZ_CP098021
• Coordinates: 416379..419768 (-)
• Length: 1129 a.a.
• NCBI ID: WP_323694959.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain V13
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 411379..424768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NAF16_RS01925 (NAF16_01925)	-	411834..412859 (-)	1026	WP_323694957.1	ABC transporter permease	-
NAF16_RS01930 (NAF16_01930)	-	412862..413848 (-)	987	WP_323694958.1	ABC transporter permease	-
NAF16_RS01935 (NAF16_01935)	-	414014..415684 (-)	1671	WP_020332024.1	ABC transporter substrate-binding protein	-
NAF16_RS01940 (NAF16_01940)	chiS	416379..419768 (-)	3390	WP_323694959.1	response regulator	Regulator
NAF16_RS01945 (NAF16_01945)	rsmC	419973..420995 (-)	1023	WP_323694960.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
NAF16_RS01950 (NAF16_01950)	-	421080..422165 (-)	1086	WP_323694961.1	AI-2E family transporter	-
NAF16_RS01955 (NAF16_01955)	-	422202..422360 (+)	159	WP_323695202.1	hypothetical protein	-
NAF16_RS01960 (NAF16_01960)	hemL	422430..423722 (-)	1293	WP_323694962.1	glutamate-1-semialdehyde 2,1-aminomutase	-
NAF16_RS01965 (NAF16_01965)	erpA	424031..424372 (+)	342	WP_020332030.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127805.40 Da
• Isoelectric Point: 6.4909

>NTDB_id=693544 NAF16_RS01940 WP_323694959.1 416379..419768(-) (chiS) [Vibrio fluvialis strain V13]
MFRFNRKQKFKRLQNTLMLAFLVLSITPLTVTAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVIDYLTAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGVDIDQAREHAQQRYVPGSGDQIKTSVLPESSSYVGSERYRLLHKRYHWAYMELLKRSDF
DDILLVDINGNVVYSIFKNANYGTNLLTGKFKDSNLGQTFRQLEKQVSEHRKTNEDYTPVVLSDFVDENGRQYAWMGAPI
IQQGYLHSYAMFRLPNNGITKLIADTNSTSSMRTLLVGQDHRSRTLAYEQPEIDKSTQVIDWALNGSRSVGTYTNQAGEK
TIAAYAPINLKDLHWALVVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
TMINTDRRDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALISGANGPINAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDINRTAVNLSNATRLVLELSNHLLGKKPIRI
INQVAENPAWVSADAQRLEQVLYNLIGNAIKYTSEGKIVISANQVDNHIRVQVVDTGQGIPAEQLEHIFEPLIQAGHDSS
RYRQGAGLGLSISRQLIELMHGSLYVSSQPMVGTTFSFTLPIASEQEIAAAQLTQLPHFQAPEFTELDLPENHSIPENPN
GPLLLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLKAVAEEKPELLLLDIMMPGMSGYQVCEELRKTYDHAQLPVIM
LTALNQTDDRVRGFEAGANDYLSKPFNKQELAARIIAHLTASKAEQRRIENAELQKELKHRAMVEASLLETQGRLLEQLE
SAPEAIVCIREDHKIRFANEAASRLFKRSQEQIKRSNADELIAPKYLLVEQEHYCGNVDIFVDDIRQHVNADVLRLPEGA
GLQAMYIFNVGGSINAARIHNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKASGDSQSKQDLMRAVLVDAMTSA
LNYWEKVSGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILDHCQEQGPERTYIEVQRD
KLQKLLTSE

Nucleotide

• Length: 3390 bp

>NTDB_id=693544 NAF16_RS01940 WP_323694959.1 416379..419768(-) (chiS) [Vibrio fluvialis strain V13]
ATGTTTAGGTTCAATCGGAAGCAAAAGTTTAAGCGCCTGCAGAATACTCTTATGCTGGCGTTCCTGGTTCTCAGCATCAC
CCCTCTGACGGTGACGGCAATCTTTTTCCTTCAATCTCACAGTAAAGACTTGCAGGAACAAAGCACATCGCACCTTCTGT
CAGTGCGGGATACCAAACAGCAGCAAGTAATCGACTACCTCACGGCTAAAGAGTCTGAAGTGATGGGCTTTGTCCGCTCA
GAACTTGCTTACGCCAGTGGAGGTCGCTTCTATGGATTGGTCAACGCATTTCAGCGCTTGGGAGTCGATATCGATCAGGC
GCGCGAGCATGCGCAGCAACGTTATGTACCGGGCTCCGGCGACCAAATCAAAACCTCCGTGTTACCAGAGTCGAGCAGTT
ACGTCGGCAGCGAACGCTATCGCTTGTTGCATAAACGCTACCACTGGGCGTATATGGAACTGCTTAAGCGTTCCGATTTT
GACGATATTCTGTTGGTCGATATCAACGGAAACGTGGTGTATTCCATTTTTAAAAATGCCAACTACGGCACCAACCTGCT
GACGGGCAAATTTAAAGACAGTAATCTGGGTCAAACCTTCCGCCAACTAGAAAAGCAGGTCAGCGAACATCGTAAAACCA
ATGAAGATTACACCCCTGTCGTACTGTCTGATTTTGTTGATGAAAATGGCCGTCAATATGCGTGGATGGGTGCACCAATC
ATTCAGCAAGGCTACTTGCACAGTTATGCGATGTTCCGCCTGCCCAATAATGGCATTACCAAGCTGATTGCAGATACCAA
CAGCACCTCTTCAATGCGCACTCTGTTGGTCGGCCAGGATCATCGCTCGCGTACCCTCGCTTACGAGCAACCAGAGATCG
ATAAGAGTACTCAAGTGATTGATTGGGCGCTGAACGGCAGTCGTTCTGTTGGCACTTATACTAATCAGGCCGGGGAAAAA
ACCATCGCCGCCTACGCCCCTATCAACCTCAAAGATTTGCATTGGGCACTGGTGGTTGAACTACCAGAAAAAGAGGCCTT
TGCGCGCGTCCGTCAGTTGGAGAAGCTGTTCATCTTCGCCATGCTGACCGCAATTATTTTGGTGGTGATCGCCTCACATT
ATCTGTCTAACTTCATTACATCTCCGCTCCTTAAACTGACCTGGGCAGCGGAGCGTGTCTCCGCTGGCGACTTGGATGAA
ACCATGATCAACACCGATCGGCGTGATGAAATTGGTCGGTTGGCGGTGAGTTTTGAACGTATGCAACGCTCTATTCGCGA
GAAGATGCAACTGATTAAGGCGCAGAATAAAGAGTTGGAAAGCAATATTCAGGTCATTCGTAAACAGAATGATGAATTGC
AGTTGGCCAACAAACTGAAAGATGAGTTTCTCGCCACAACTTCGCATGAACTCAGAACGCCTTTACATGGCATGATCGGT
ATTGCCGAGGCGCTGATTTCCGGCGCCAATGGTCCAATTAATGCGGCACACAAGTATCAGCTCGACATTATCATCAGTAG
CGGTCAACGACTGGCCACTTTGGTGGATGACTTGCTCGACTACCACAAAATGCGCTACGGCAATCTCGACATCAACAGGA
CTGCGGTTAATCTGTCCAATGCCACGCGTTTGGTGCTGGAACTGTCTAATCATCTGTTGGGCAAAAAGCCAATCCGCATT
ATTAACCAAGTCGCCGAAAATCCGGCGTGGGTATCTGCCGATGCCCAGCGTTTGGAACAGGTGTTGTATAACCTGATCGG
CAACGCCATCAAATACACCTCGGAAGGTAAGATTGTCATCTCAGCCAATCAAGTCGATAACCATATTCGCGTTCAGGTCG
TGGATACCGGCCAAGGCATTCCGGCCGAACAGCTGGAGCACATTTTTGAACCTCTGATTCAAGCCGGACATGACAGCAGT
CGCTATCGTCAGGGGGCAGGACTGGGACTCTCCATCAGCCGTCAGTTAATTGAGTTGATGCATGGCTCGCTGTATGTCAG
CAGCCAACCTATGGTTGGCACTACCTTTAGTTTCACCCTGCCAATCGCGTCAGAACAAGAGATTGCTGCCGCACAGCTGA
CGCAGCTACCCCATTTCCAGGCTCCTGAATTTACGGAACTGGATCTGCCAGAGAATCATAGCATTCCGGAAAATCCGAAC
GGCCCACTGCTGTTAGTCGCGGATGATGAGCCAGTTAACTTACGTGTTCTGGACAGCTTCCTGCGTTTAGAAGGCTATCG
TGTACGCACCGCACAGGATGGCAATGAAGTGTTGAAAGCTGTGGCTGAAGAGAAACCGGAGCTGCTATTGCTCGACATCA
TGATGCCCGGTATGAGTGGTTATCAGGTTTGTGAAGAGCTGCGTAAAACGTATGATCACGCTCAATTACCGGTAATTATG
CTGACCGCTTTGAATCAAACCGACGATCGCGTACGAGGCTTTGAAGCGGGTGCCAACGACTACCTGTCCAAACCTTTCAA
CAAACAGGAACTGGCTGCACGTATTATCGCGCACCTGACAGCGAGCAAAGCAGAACAACGTCGGATTGAAAACGCCGAGT
TGCAGAAAGAATTGAAGCACCGCGCGATGGTTGAGGCCAGTTTGCTGGAAACACAAGGACGTTTGTTGGAACAGCTGGAA
TCGGCACCGGAAGCCATTGTTTGTATTCGTGAAGATCACAAAATCCGCTTTGCCAATGAAGCTGCTTCGCGCCTGTTTAA
ACGCAGTCAGGAGCAAATCAAGCGTTCTAACGCAGATGAGTTGATCGCTCCGAAGTATCTGCTGGTCGAACAGGAACATT
ATTGCGGCAACGTCGATATTTTTGTTGATGATATCCGGCAACACGTCAATGCTGATGTCCTCCGCCTGCCAGAAGGCGCC
GGATTACAGGCAATGTATATCTTTAATGTGGGTGGCAGCATTAACGCTGCGCGTATTCATAACCTTGAAACCGCCGTTGA
AGCCCTGTCGAGCTATGCCTTTGAAGGCGACAAGGATAAGCTGCAGCAACTCAAAGAACTGGGGGGAGAATTTACCCGTC
TGGCAGACAAAGCCTCAGGAGACAGTCAATCGAAGCAGGACTTGATGCGCGCTGTCTTGGTGGATGCGATGACATCAGCC
CTCAACTATTGGGAGAAAGTCTCCGGGCAAAGTAAATTCACGTTCGCAGAACAAAGTGGGTTATGGCGCGTCTATCTGGA
CCGAAGCACGCTGCAGACCCGCACACTCGACAAGTATCTGCGTATCGAAACACTGCCTAAAACACCGCGGTGGCGCACGG
TACTCAATTCGCTGGATTACATTCTCGACCACTGTCAGGAGCAGGGGCCTGAACGTACCTACATTGAAGTACAACGTGAC
AAACTGCAAAAGCTGCTCACCTCTGAATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-835)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	84.854	100	0.849