Detailed information NTG0693533

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NAF16_RS00470
• Genome accession: NZ_CP098021
• Coordinates: 107172..108179 (+)
• Length: 335 a.a.
• NCBI ID: WP_020429332.1
• Uniprot ID: A0AAX2LJL2
• Organism: Vibrio fluvialis strain V13
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 102172..113179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NAF16_RS00450 (NAF16_00450)	metJ	102319..102636 (+)	318	WP_020329393.1	met regulon transcriptional regulator MetJ	-
NAF16_RS00455 (NAF16_00455)	-	102713..103990 (-)	1278	WP_323694910.1	malic enzyme-like NAD(P)-binding protein	-
NAF16_RS00460 (NAF16_00460)	rpmE	104202..104420 (-)	219	WP_020329395.1	50S ribosomal protein L31	-
NAF16_RS00465 (NAF16_00465)	priA	104666..106867 (+)	2202	WP_047460339.1	primosomal protein N'	-
NAF16_RS00470 (NAF16_00470)	cytR	107172..108179 (+)	1008	WP_020429332.1	DNA-binding transcriptional regulator CytR	Regulator
NAF16_RS00475 (NAF16_00475)	ftsN	108309..108866 (+)	558	WP_024373673.1	cell division protein FtsN	-
NAF16_RS00480 (NAF16_00480)	hslV	109002..109556 (+)	555	WP_020329399.1	ATP-dependent protease subunit HslV	-
NAF16_RS00485 (NAF16_00485)	hslU	109598..110929 (+)	1332	WP_020329400.1	HslU--HslV peptidase ATPase subunit	-
NAF16_RS00490 (NAF16_00490)	-	111018..111935 (+)	918	WP_020329401.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NAF16_RS00495 (NAF16_00495)	rraA	112011..112538 (+)	528	WP_020329402.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36914.45 Da
• Isoelectric Point: 6.3516

>NTDB_id=693533 NAF16_RS00470 WP_020429332.1 107172..108179(+) (cytR) [Vibrio fluvialis strain V13]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQIAGPEAAVLCQFRQQGYQQALRRAGITRNPTYSMSGDFTFESGAKAVRQLLALPEPPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRESAAPPRSM

Nucleotide

• Length: 1008 bp

>NTDB_id=693533 NAF16_RS00470 WP_020429332.1 107172..108179(+) (cytR) [Vibrio fluvialis strain V13]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTTTCGACGGCGACGGTCTCGCGCGCTCTGATGAATCCCGAAAA
AGTTTCAGCCTCAACCCGTAAGCGGGTCGAGGAGGCAGTTTTAGAAGCTGGCTATTCACCGAATTCTTTGGCCCGAAATC
TGCGCCGCAATGAGTCAAAAACCATTGTCGCGATAGTGCCGGATATCTGTGACCCTTATTACACAGAGATCATTCGTGGT
ATCGAAGATGCTGCAATGGAACATGGTTATCTGGTGCTGCTGGGCGACAGCGGACAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACCTGGTGTTTACCAAACAAGCGGACGGCATGTTACTGCTGGGGACTGACTTGCCGTTTGATGTGAGCAAACCTG
AGCAGAAAAACCTGCCACCCATGGTGATGGCGTGTGAGTTTGCGCCGGAGCTTGAGCTACCTACGGTACACATTGATAAC
CTGACATCGGCGTTTGAAGCCGTGAACTATCTGACTCAGATGGGGCACAAGCGCGTGGCGCAAATCGCCGGACCGGAAGC
CGCGGTGCTTTGTCAGTTCCGTCAGCAAGGTTATCAGCAGGCGCTGCGTCGTGCGGGTATCACTCGCAATCCGACCTACA
GTATGAGTGGTGACTTTACTTTTGAGTCCGGAGCCAAAGCGGTGCGTCAATTATTGGCCCTGCCTGAGCCACCAACGGCT
ATCTTCTGTCACAACGATACCATGGCGATTGGCGCGATTCAGGAAGCGAAACGTCTGGGACTGCGCGTACCGCAGGATCT
CTCTGTGGTGGGCTTTGATGACATTCAATTCGCCCAGTACTGCGATCCACCGCTGACGACCATCTCTCAGCCTCGCTACG
AGATTGGCCGTCAGGCGATGCTGATGATGCTGGAATTGCTGCGTGGTCATGACGTACGTGCCGGCTCACGTTTGCTGGAA
ACTCAGCTGGTGGTGCGTGAGAGTGCAGCGCCGCCTCGTTCGATGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	94.277	99.104	0.934
cytR	Vibrio parahaemolyticus RIMD 2210633	90.691	99.403	0.901