Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LQ939_RS02295 Genome accession   NZ_CP097983
Coordinates   499866..501299 (-) Length   477 a.a.
NCBI ID   WP_250651598.1    Uniprot ID   -
Organism   Pantoea alhagi strain NX-11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494866..506299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ939_RS02270 (LQ939_02270) mtgA 496992..497678 (+) 687 WP_250651596.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LQ939_RS02275 (LQ939_02275) npr 497687..497959 (-) 273 WP_085068341.1 PTS phosphocarrier protein NPr -
  LQ939_RS02280 (LQ939_02280) rapZ 497956..498810 (-) 855 WP_250651597.1 RNase adapter RapZ -
  LQ939_RS02285 (LQ939_02285) ptsN 498881..499363 (-) 483 WP_208615348.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LQ939_RS02290 (LQ939_02290) hpf 499555..499842 (-) 288 WP_085068335.1 ribosome hibernation promoting factor -
  LQ939_RS02295 (LQ939_02295) rpoN/rpoN1 499866..501299 (-) 1434 WP_250651598.1 RNA polymerase factor sigma-54 Machinery gene
  LQ939_RS02300 (LQ939_02300) lptB 501348..502073 (-) 726 WP_085068332.1 LPS export ABC transporter ATP-binding protein -
  LQ939_RS02305 (LQ939_02305) lptA 502079..502624 (-) 546 WP_418304148.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  LQ939_RS02310 (LQ939_02310) lptC 502605..503180 (-) 576 WP_250651599.1 LPS export ABC transporter periplasmic protein LptC -
  LQ939_RS02315 (LQ939_02315) kdsC 503177..503743 (-) 567 WP_250651600.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LQ939_RS02320 (LQ939_02320) kdsD 503761..504747 (-) 987 WP_250651601.1 arabinose-5-phosphate isomerase KdsD -
  LQ939_RS02325 (LQ939_02325) - 504762..505742 (-) 981 WP_250651602.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53859.70 Da        Isoelectric Point: 4.3881

>NTDB_id=693507 LQ939_RS02295 WP_250651598.1 499866..501299(-) (rpoN/rpoN1) [Pantoea alhagi strain NX-11]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDIHEEVDSLEYVESEALDTREALEQKDMPE
ELPLDATWDEIYTAGTPSGTGNDYRDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAIDDTGYLTVTLDD
IRDSLGDEDVALDEVEAVLKRVQRFDPVGVGARNLRDCLLVQLSQFARDTPFLAEAQLIVDQYLDLLANHDFRSLMRVTR
LKEDVLKTALALIQSLDPRPGQSVNTREPEYVIPDVLVRKTGNRWTVELNSDSVPRLQINQQYAALGNSARSDSDSQFIR
TNLQDAKWLIKSLESRNDTLLKVTRCIVEQQQAFFEQGEEFMRPMVLADIAQAVDMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLISAENPAKPLSDSKLTTLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=693507 LQ939_RS02295 WP_250651598.1 499866..501299(-) (rpoN/rpoN1) [Pantoea alhagi strain NX-11]
ATGAAGCAAGGTTTGCAACTCAGACTCAGTCAACAGCTTGCGATGACTCCGCAGCTACAGCAGGCAATCCGTTTGCTGCA
GCTTTCTACGCTGGAACTTCAACAGGAGATACAGCTGGCGCTGGAGAGTAATCCGTTGCTTGAGCAGACCGATATCCATG
AGGAAGTAGATTCTCTCGAATATGTTGAAAGCGAAGCGCTTGATACGCGTGAGGCGCTTGAACAAAAGGATATGCCGGAA
GAGTTGCCGCTTGATGCAACCTGGGATGAGATCTATACGGCCGGTACACCCTCAGGCACCGGCAATGACTATCGCGATGA
TGAACTACCGGTTTATCAGGGCGAAACCACCCAAACCTTGCAGGATTACCTGATGTGGCAGGTAGAGCTAACGCCGTTTA
GCGATACCGACCGCGCGATTGCCACCTCGATCGTCGATGCCATTGACGATACCGGCTACCTTACCGTTACGCTGGATGAT
ATCCGCGACAGCCTTGGCGACGAGGATGTGGCGCTGGATGAGGTCGAAGCGGTTCTGAAGCGAGTCCAGCGTTTCGATCC
GGTTGGAGTGGGCGCACGTAATCTGCGTGACTGTCTGCTGGTACAGCTTTCGCAATTTGCGCGCGATACGCCCTTTCTGG
CCGAAGCGCAGCTGATTGTGGATCAATACCTCGATCTGCTGGCCAACCATGATTTCCGCAGCCTGATGCGCGTGACGCGT
CTGAAAGAGGATGTGTTGAAAACGGCGCTGGCGCTGATTCAGTCACTGGATCCACGACCAGGCCAGTCAGTTAACACCCG
TGAACCGGAATATGTCATCCCTGATGTGCTGGTGCGTAAAACAGGCAATCGCTGGACGGTTGAGTTAAACAGCGACAGCG
TGCCGCGCCTGCAGATCAATCAGCAATACGCCGCGCTGGGCAATTCGGCGCGTAGCGACAGCGATAGCCAGTTTATTCGC
ACCAATCTACAGGATGCGAAATGGCTGATTAAAAGCCTGGAAAGCCGCAATGATACGCTGCTCAAAGTCACGCGTTGCAT
TGTGGAACAACAGCAGGCTTTTTTTGAGCAGGGTGAAGAGTTTATGCGTCCGATGGTGCTGGCGGATATCGCCCAGGCCG
TTGATATGCATGAGTCGACCATTTCCCGCGTTACCACCCAAAAATATCTGCACAGCCCACGCGGCATTTTTGAACTGAAA
TACTTTTTCTCCAGCCATGTTAATACCGAAGGCGGGGGCGAAGCCTCATCAACCGCCATTCGCGCGCTGGTGAAAAAGCT
AATCTCGGCGGAAAACCCCGCCAAACCGCTGAGCGACAGCAAGCTCACTACCCTGTTGTCTGAGCAAGGCATTATGGTGG
CGCGCCGTACCGTCGCGAAGTATCGCGAGTCTTTATCCATCCCGCCATCAAACCAGCGTAAGCAATTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.726

100

0.482