Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CHL1_RS12770 Genome accession   NZ_CP097897
Coordinates   2631235..2632596 (-) Length   453 a.a.
NCBI ID   WP_250933257.1    Uniprot ID   -
Organism   Acetobacterium wieringae strain CH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2626235..2637596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHL1_RS12740 (CHL1_002547) yajC 2626380..2626760 (-) 381 WP_228882821.1 preprotein translocase subunit YajC -
  CHL1_RS12745 (CHL1_002548) tgt 2626779..2627900 (-) 1122 WP_070370501.1 tRNA guanosine(34) transglycosylase Tgt -
  CHL1_RS12750 (CHL1_002549) queA 2628190..2629215 (-) 1026 WP_070370500.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CHL1_RS12755 (CHL1_002550) ruvB 2629208..2630272 (-) 1065 WP_070370499.1 Holliday junction branch migration DNA helicase RuvB -
  CHL1_RS12760 (CHL1_002551) ruvA 2630276..2630878 (-) 603 WP_070370498.1 Holliday junction branch migration protein RuvA -
  CHL1_RS12770 (CHL1_002553) radA 2631235..2632596 (-) 1362 WP_250933257.1 DNA repair protein RadA Machinery gene
  CHL1_RS12775 (CHL1_002554) - 2632613..2633101 (-) 489 WP_070370496.1 VanZ family protein -
  CHL1_RS12780 (CHL1_002555) - 2633436..2634071 (-) 636 WP_250933259.1 YigZ family protein -
  CHL1_RS12785 (CHL1_002556) hflX 2634074..2635888 (-) 1815 WP_148638739.1 GTPase HflX -
  CHL1_RS12790 (CHL1_002557) thiI 2635972..2637132 (-) 1161 WP_070370068.1 tRNA uracil 4-sulfurtransferase ThiI -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49862.01 Da        Isoelectric Point: 6.5040

>NTDB_id=693477 CHL1_RS12770 WP_250933257.1 2631235..2632596(-) (radA) [Acetobacterium wieringae strain CH1]
MAKKKSIFVCQSCGYESPKWMGKCPECGQWNSMVEELDFSKQGSKETIRERGVYSKPKSLAEITYTGDTRYPTCNEEFDR
VLGGGIVPGGMILLGGDPGIGKSTLLLQTTEALGNQGYKILYISGEESEQQLKMRAERMKVKSEKISFLSEINIPYLLTI
ILEERPDIVIIDSIQTMYSPDISSAPGSVSQIRENTGALMQLAKKDNIAMVLVGHVTKDGAIAGPRVLEHMVDTVLYFEG
EKYHAYRILRGVKNRFGSTNEIGIFEMTENGLQSVANPSEMMLDSRPENTCGSVVVPCIEGSRPLLIELQGLVSPTGFGN
PRRMATGMDYNRMVLLLAIMEKRLGIQMQSVDAYINVVGGIKVDEPALDLGVIAVLYSSLRDFQIPGDLMILGEVGLTGE
VRNIQHIEKRLIEGKKLGFKRCIIPKGNQKGLKIAGMTILPVDSIRSALDILL

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=693477 CHL1_RS12770 WP_250933257.1 2631235..2632596(-) (radA) [Acetobacterium wieringae strain CH1]
ATGGCAAAGAAAAAAAGTATTTTTGTCTGTCAGAGCTGTGGTTATGAATCGCCCAAATGGATGGGTAAATGCCCGGAGTG
TGGGCAGTGGAATAGCATGGTGGAAGAGTTGGATTTTTCTAAGCAGGGAAGTAAGGAAACGATTCGGGAACGGGGCGTTT
ATTCTAAACCGAAGTCCCTAGCGGAGATTACCTATACTGGGGACACCCGCTACCCGACCTGCAATGAAGAGTTTGATCGG
GTTCTGGGTGGCGGGATTGTCCCTGGGGGGATGATCTTGCTGGGCGGTGACCCGGGGATCGGGAAATCGACGTTGCTTCT
GCAGACCACTGAAGCCCTGGGAAATCAGGGCTATAAGATTTTATATATTTCCGGCGAAGAGTCGGAACAGCAATTAAAAA
TGCGGGCAGAGCGAATGAAGGTAAAATCTGAAAAGATTTCTTTCTTATCGGAGATTAATATTCCCTATCTGCTGACGATT
ATTCTAGAAGAGCGGCCAGATATTGTCATTATCGATTCGATTCAGACCATGTACAGCCCGGACATCAGCTCAGCTCCAGG
CAGTGTCAGCCAGATCCGTGAAAACACCGGCGCACTGATGCAATTGGCCAAAAAAGATAATATCGCAATGGTGTTGGTGG
GGCATGTCACCAAAGATGGGGCCATTGCCGGTCCCCGGGTGCTGGAGCATATGGTTGATACGGTGCTTTATTTTGAGGGC
GAAAAATATCACGCTTATCGGATTCTAAGGGGTGTCAAAAATCGTTTTGGCTCCACCAATGAAATCGGGATTTTTGAAAT
GACTGAAAATGGCTTGCAGTCGGTAGCCAATCCATCGGAGATGATGCTCGACAGCCGTCCCGAAAATACCTGTGGATCGG
TGGTGGTGCCCTGTATTGAGGGGTCCCGGCCGTTGCTGATTGAGCTGCAGGGGCTGGTTTCGCCCACTGGCTTTGGAAAT
CCCCGACGAATGGCCACTGGCATGGATTATAACCGGATGGTATTATTGCTGGCAATTATGGAGAAGCGGCTGGGAATTCA
GATGCAGTCGGTGGATGCGTACATCAATGTGGTGGGTGGCATCAAGGTGGATGAACCCGCACTCGATCTGGGAGTAATTG
CTGTACTTTACTCCAGCCTCCGGGATTTTCAGATCCCCGGCGATTTGATGATTCTGGGCGAGGTGGGATTAACGGGTGAA
GTCCGTAACATCCAGCACATCGAAAAACGCCTGATCGAAGGAAAAAAACTGGGCTTTAAGCGTTGCATTATCCCCAAAGG
CAACCAGAAAGGCTTGAAAATTGCCGGAATGACGATTCTCCCGGTAGATAGTATTCGTTCGGCCCTGGACATTTTACTGT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.525

100

0.545
  radA Streptococcus mitis NCTC 12261

53.009

95.364

0.506
  radA Streptococcus pneumoniae Rx1

52.535

95.806

0.503
  radA Streptococcus pneumoniae D39

52.535

95.806

0.503
  radA Streptococcus pneumoniae R6

52.535

95.806

0.503
  radA Streptococcus pneumoniae TIGR4

52.535

95.806

0.503
  radA Streptococcus mitis SK321

52.778

95.364

0.503