Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M9782_RS04825 Genome accession   NZ_CP097896
Coordinates   1067926..1069308 (-) Length   460 a.a.
NCBI ID   WP_005971086.1    Uniprot ID   A0A1V2R930
Organism   Pectobacterium actinidiae strain GX-Pa1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1062926..1074308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9782_RS04790 (M9782_04790) - 1063033..1063620 (-) 588 WP_275071781.1 YecA family protein -
  M9782_RS04795 (M9782_04795) zapA 1063813..1064142 (+) 330 WP_039304500.1 cell division protein ZapA -
  M9782_RS04805 (M9782_04805) - 1064440..1065087 (+) 648 WP_275071782.1 5-formyltetrahydrofolate cyclo-ligase -
  M9782_RS04810 (M9782_04810) nadR 1065084..1066337 (-) 1254 WP_039355086.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  M9782_RS04815 (M9782_04815) - 1066415..1067347 (-) 933 WP_275071783.1 LysR substrate-binding domain-containing protein -
  M9782_RS04820 (M9782_04820) - 1067466..1067861 (+) 396 WP_039355093.1 VOC family protein -
  M9782_RS04825 (M9782_04825) radA 1067926..1069308 (-) 1383 WP_005971086.1 DNA repair protein RadA Machinery gene
  M9782_RS04830 (M9782_04830) serB 1069325..1070302 (-) 978 WP_275071784.1 phosphoserine phosphatase -
  M9782_RS04835 (M9782_04835) - 1070459..1071157 (+) 699 WP_039355098.1 YtjB family periplasmic protein -
  M9782_RS04840 (M9782_04840) - 1071212..1072129 (-) 918 WP_275071785.1 hypothetical protein -
  M9782_RS04845 (M9782_04845) prfC 1072421..1074010 (+) 1590 WP_039355102.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49576.13 Da        Isoelectric Point: 7.4218

>NTDB_id=693450 M9782_RS04825 WP_005971086.1 1067926..1069308(-) (radA) [Pectobacterium actinidiae strain GX-Pa1]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=693450 M9782_RS04825 WP_005971086.1 1067926..1069308(-) (radA) [Pectobacterium actinidiae strain GX-Pa1]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGTCATGCCTGGAATACCATTACCGAAGTCCGTCTGGCCTCAGCGTCGGTGTCACGTTCTGACCGTCTCACTGGCTATG
CAGGCGAAAGCGCTGGCGTCAGCCGGGTACAAAAGCTCTCAGAAATCAGTCTTGAAGCGCTGCCTCGCTTTTCTACCGGC
TTTCAGGAATTTGACCGTGTTCTGGGCGGCGGCGTCGTTCCGGGCAGCGCCATTCTGATCGGCGGTAACCCCGGTGCAGG
TAAAAGTACGTTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACCGGCGAAGAATCAC
TCCAGCAGGTGGCGATGCGGGCACATCGCCTCAACCTGCCAACCCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAG
CAGATTTGCCTGATTGCCGAGCAGGAACAACCTAAGCTGATGGTGATCGACTCGATTCAGGTCATGCATCTCGCCGACAT
TCAATCGTCTCCCGGTAGCGTGGCGCAGGTGCGTGAAACGGCGGCTTACCTGACGCGTTTCGCCAAAACGCGCGGTGTTG
CTATCGTCATGGTCGGCCACGTTACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGTTGGATGGCGATGCGGATTCCCGCTTCCGCACGCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAATGAGCT
GGGCGTATTCGCGATGACAGAACAAGGTCTACGCGAGATTAGCAATCCGTCAGCCATTTTCCTCAGCCGCGGGGACGAAG
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGTACGCGTCCGCTGCTGGTCGAAATTCAGGCGCTGGTCGATCAA
TCGATGATGGCTAACCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAACCGCTTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTACAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGGGGCGTTAAAGTCACCGAAACCAGTGCCG
ATCTGGCGCTGCTGCTATCGCTGGTCTCCAGTTTCCGTGACCGCCCGCTACCACAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCCGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAACACGGTTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCCTCGACGATCTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2R930

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426