Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   M8561_RS01790 Genome accession   NZ_CP097895
Coordinates   361541..361978 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain B1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 356541..366978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8561_RS01755 (M8561_01755) - 357122..357283 (-) 162 Protein_305 hypothetical protein -
  M8561_RS01760 (M8561_01760) - 357400..358602 (+) 1203 WP_024084872.1 GTP-binding protein -
  M8561_RS01765 (M8561_01765) - 358667..359802 (+) 1136 Protein_307 zinc-dependent alcohol dehydrogenase -
  M8561_RS01770 (M8561_01770) - 359817..360251 (+) 435 WP_021494203.1 RDD family protein -
  M8561_RS01775 (M8561_01775) - 360323..360643 (+) 321 WP_015388719.1 YckD family protein -
  M8561_RS01780 (M8561_01780) - 360862..361080 (+) 219 Protein_310 family 1 glycosylhydrolase -
  M8561_RS01785 (M8561_01785) nin/comJ 361121..361519 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  M8561_RS01790 (M8561_01790) nucA/comI 361541..361978 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  M8561_RS01795 (M8561_01795) hxlB 362337..362894 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  M8561_RS01800 (M8561_01800) hxlA 362891..363526 (-) 636 WP_024084873.1 3-hexulose-6-phosphate synthase -
  M8561_RS01805 (M8561_01805) - 363758..364120 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=693375 M8561_RS01790 WP_003156588.1 361541..361978(-) (nucA/comI) [Bacillus velezensis strain B1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=693375 M8561_RS01790 WP_003156588.1 361541..361978(-) (nucA/comI) [Bacillus velezensis strain B1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641