Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   NAA64_RS04510 Genome accession   NZ_CP097887
Coordinates   951525..952241 (-) Length   238 a.a.
NCBI ID   WP_167868145.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain SA283     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 946525..957241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAA64_RS04490 (NAA64_04490) - 947415..947639 (+) 225 WP_002509111.1 sulfurtransferase TusA family protein -
  NAA64_RS04495 (NAA64_04495) - 947971..948930 (+) 960 WP_103388377.1 LacI family DNA-binding transcriptional regulator -
  NAA64_RS04500 (NAA64_04500) - 949013..950497 (+) 1485 WP_103388378.1 sucrose-6-phosphate hydrolase -
  NAA64_RS04505 (NAA64_04505) - 950494..951456 (+) 963 WP_167868146.1 carbohydrate kinase family protein -
  NAA64_RS04510 (NAA64_04510) agrA 951525..952241 (-) 717 WP_167868145.1 quorum-sensing response regulator AgrA Regulator
  NAA64_RS04515 (NAA64_04515) agrC 952254..953549 (-) 1296 WP_167868144.1 quorum-sensing sensor histidine kinase AgrC -
  NAA64_RS04520 (NAA64_04520) agrD 953582..953719 (-) 138 WP_103388381.1 cyclic lactone autoinducer peptide AgrD -
  NAA64_RS04525 (NAA64_04525) - 953716..954291 (-) 576 WP_002509118.1 accessory gene regulator AgrB -
  NAA64_RS04530 (NAA64_04530) - 955034..955819 (-) 786 WP_002509119.1 carbon-nitrogen family hydrolase -
  NAA64_RS04535 (NAA64_04535) - 956076..956705 (-) 630 WP_021459259.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27710.48 Da        Isoelectric Point: 4.8360

>NTDB_id=693342 NAA64_RS04510 WP_167868145.1 951525..952241(-) (agrA) [Staphylococcus arlettae strain SA283]
MKIFICEDDVRQRDSMVSIIDNYIMIEEKPMEIALATGDPYAILEEAKNQQGVGCYFLDIQLDADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKIAAMDFIFKDDPEELKARIIDCIETSETRLNLLSKDSSVETIELKQGSNSVYVRYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDNRFFRCHNSFVVNRHNIESIDSKERIVYFNNQEYCYASVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=693342 NAA64_RS04510 WP_167868145.1 951525..952241(-) (agrA) [Staphylococcus arlettae strain SA283]
TTGAAAATTTTCATATGCGAAGATGATGTGAGGCAGCGAGACAGTATGGTGTCTATTATTGATAACTATATTATGATTGA
AGAAAAGCCAATGGAAATTGCATTGGCCACTGGAGATCCTTACGCAATTTTAGAGGAAGCAAAAAATCAGCAGGGCGTTG
GTTGTTACTTTTTAGATATCCAACTCGATGCAGATATCAATGGCATTAAATTAGCAAGCGAAATTCGAAAGCATGACCCA
GTGGGAAATATCATATTTGTTACAAGCCATAGTGAGCTCACTTATTTAACTTTCGTCTATAAAATTGCTGCGATGGATTT
TATCTTTAAAGATGATCCTGAAGAACTAAAAGCTCGCATTATCGATTGTATAGAAACGTCTGAAACACGCTTAAATCTTT
TATCGAAAGATAGTAGCGTTGAAACGATAGAACTTAAACAAGGCAGTAATTCGGTGTATGTTCGCTATGATGACATTATG
TTTTTTGAATCTTCATCTAAATCACACCGCTTAATTGCGCATTTAGACAATCGGCAAATTGAATTCTACGGTAACTTAAA
AGAACTCAGTCAGTTAGATAATCGATTTTTCAGGTGTCACAATAGTTTCGTAGTGAATCGCCATAATATTGAATCCATTG
ATTCTAAAGAACGTATCGTTTATTTTAATAATCAAGAATATTGCTATGCATCAGTTCGAAATATAAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.294

100

0.853