Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NAG72_RS16885 Genome accession   NZ_CP097884
Coordinates   3471964..3472593 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3466964..3477593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG72_RS16870 helD 3467206..3469260 (-) 2055 WP_001295354.1 DNA helicase IV -
  NAG72_RS16875 yccF 3469383..3469829 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NAG72_RS16880 yccS 3469839..3472001 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NAG72_RS16885 sxy/tfoX 3471964..3472593 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NAG72_RS16890 sulA 3472812..3473321 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NAG72_RS16895 ompA 3473678..3474718 (+) 1041 WP_000750416.1 porin OmpA -
  NAG72_RS16900 matP 3474794..3475246 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NAG72_RS16905 ycbZ 3475432..3477192 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=693309 NAG72_RS16885 WP_000839153.1 3471964..3472593(-) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=693309 NAG72_RS16885 WP_000839153.1 3471964..3472593(-) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1