Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   NAG75_RS24750 Genome accession   NZ_CP097874
Coordinates   1737457..1738638 (-) Length   393 a.a.
NCBI ID   WP_208894360.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1732457..1743638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS24735 - 1733760..1734308 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  NAG75_RS24740 - 1734394..1735011 (-) 618 WP_208894349.1 HAD family phosphatase -
  NAG75_RS24745 cqsS 1735331..1737379 (+) 2049 WP_208894358.1 response regulator Regulator
  NAG75_RS24750 cqsA 1737457..1738638 (-) 1182 WP_208894360.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  NAG75_RS24755 ylqF 1738993..1739937 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  NAG75_RS24760 - 1740227..1740964 (-) 738 WP_005454086.1 EAL domain-containing protein -
  NAG75_RS24765 - 1741144..1743366 (-) 2223 WP_264402760.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43796.04 Da        Isoelectric Point: 6.4979

>NTDB_id=693225 NAG75_RS24750 WP_208894360.1 1737457..1738638(-) (cqsA) [Vibrio parahaemolyticus strain GL-601]
MCTKNETRPLPSFIEERLNFHIQDLIKSNGNQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTISPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNQLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=693225 NAG75_RS24750 WP_208894360.1 1737457..1738638(-) (cqsA) [Vibrio parahaemolyticus strain GL-601]
ATGTGTACTAAAAACGAAACTAGACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGGAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAGCCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCTC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCTCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACCAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAATTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.486

97.455

0.57