Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   NAG75_RS19455 Genome accession   NZ_CP097874
Coordinates   541955..543052 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain GL-601     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 536955..548052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS19440 - 537618..538673 (-) 1056 WP_015313427.1 HlyD family secretion protein -
  NAG75_RS19445 slyA 538712..539167 (-) 456 WP_017447361.1 transcriptional regulator SlyA -
  NAG75_RS19450 luxQ 539379..541955 (-) 2577 WP_005477121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  NAG75_RS19455 luxP 541955..543052 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  NAG75_RS19460 - 543404..543724 (-) 321 WP_264402733.1 GIY-YIG nuclease family protein -
  NAG75_RS19465 - 543721..544371 (-) 651 WP_005499314.1 YceH family protein -
  NAG75_RS19470 - 544548..544763 (-) 216 WP_005477197.1 hypothetical protein -
  NAG75_RS19475 - 545091..545405 (+) 315 WP_005453573.1 DUF496 family protein -
  NAG75_RS19480 - 545528..546865 (+) 1338 WP_062889019.1 MATE family efflux transporter -
  NAG75_RS19485 - 546939..547916 (-) 978 WP_264402734.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=693222 NAG75_RS19455 WP_005463467.1 541955..543052(-) (luxP) [Vibrio parahaemolyticus strain GL-601]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=693222 NAG75_RS19455 WP_005463467.1 541955..543052(-) (luxP) [Vibrio parahaemolyticus strain GL-601]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGCAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644