Detailed information NTG0693206

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: NAG75_RS10270
• Genome accession: NZ_CP097873
• Coordinates: 1972659..1974080 (+)
• Length: 473 a.a.
• NCBI ID: WP_021449193.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain GL-601
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1967659..1979080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NAG75_RS10250	-	1967718..1968470 (-)	753	WP_180798396.1	adenosylcobinamide-GDP ribazoletransferase	-
NAG75_RS10255	cobT	1968515..1969558 (-)	1044	WP_024702672.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
NAG75_RS10260	-	1970242..1970937 (+)	696	WP_020903895.1	NAD(P)H-binding protein	-
NAG75_RS10265	-	1971130..1972503 (+)	1374	WP_074544367.1	L-cystine transporter	-
NAG75_RS10270	sbcB	1972659..1974080 (+)	1422	WP_021449193.1	exodeoxyribonuclease I	Machinery gene
NAG75_RS10275	-	1974136..1974510 (+)	375	WP_005455074.1	CidA/LrgA family protein	-
NAG75_RS10280	-	1974512..1975189 (+)	678	WP_020840482.1	LrgB family protein	-
NAG75_RS10285	cdd	1975553..1976440 (+)	888	WP_020840481.1	cytidine deaminase	-
NAG75_RS10290	purT	1976588..1977763 (+)	1176	WP_005495504.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
NAG75_RS10295	-	1977865..1978515 (-)	651	WP_208893700.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54645.97 Da
• Isoelectric Point: 4.9813

>NTDB_id=693206 NAG75_RS10270 WP_021449193.1 1972659..1974080(+) (sbcB) [Vibrio parahaemolyticus strain GL-601]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=693206 NAG75_RS10270 WP_021449193.1 1972659..1974080(+) (sbcB) [Vibrio parahaemolyticus strain GL-601]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCGCCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799