Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NAG75_RS03815 Genome accession   NZ_CP097873
Coordinates   621805..622323 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain GL-601     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 616805..627323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS03805 gshA 619540..621108 (+) 1569 WP_025638574.1 glutamate--cysteine ligase -
  NAG75_RS03810 - 621133..621738 (+) 606 WP_023585955.1 hypothetical protein -
  NAG75_RS03815 luxS 621805..622323 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  NAG75_RS03820 - 622384..623664 (-) 1281 WP_043037712.1 HlyC/CorC family transporter -
  NAG75_RS03825 - 623790..624584 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  NAG75_RS03830 ffh 624797..626179 (+) 1383 WP_005462555.1 signal recognition particle protein -
  NAG75_RS03835 rpsP 626389..626637 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  NAG75_RS03840 rimM 626666..627214 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=693198 NAG75_RS03815 WP_005462534.1 621805..622323(+) (luxS) [Vibrio parahaemolyticus strain GL-601]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=693198 NAG75_RS03815 WP_005462534.1 621805..622323(+) (luxS) [Vibrio parahaemolyticus strain GL-601]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884