Detailed information NTG0693195

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NAG75_RS03685
• Genome accession: NZ_CP097873
• Coordinates: 599219..600208 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain GL-601
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 594219..605208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NAG75_RS03650	ftsB	594227..594508 (+)	282	WP_005455577.1	cell division protein FtsB	-
NAG75_RS03655	ispD	594510..595214 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NAG75_RS03660	ispF	595232..595708 (+)	477	WP_140335023.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NAG75_RS03665	truD	595755..596798 (+)	1044	WP_020841270.1	tRNA pseudouridine(13) synthase TruD	-
NAG75_RS03670	surE	596798..597574 (+)	777	WP_025575295.1	5'/3'-nucleotidase SurE	-
NAG75_RS03675	-	597574..598200 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NAG75_RS03680	-	598215..599138 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
NAG75_RS03685	rpoS	599219..600208 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
NAG75_RS03690	mutS	600288..602849 (-)	2562	WP_062866927.1	DNA mismatch repair protein MutS	-
NAG75_RS03695	pncC	602934..603416 (+)	483	WP_208893456.1	nicotinamide-nucleotide amidase	-
NAG75_RS03700	recA	603617..604660 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=693195 NAG75_RS03685 WP_005478537.1 599219..600208(+) (rpoS) [Vibrio parahaemolyticus strain GL-601]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=693195 NAG75_RS03685 WP_005478537.1 599219..600208(+) (rpoS) [Vibrio parahaemolyticus strain GL-601]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCTTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851