Detailed information NTG0693172

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LpnA194_RS06200
• Genome accession: NZ_CP114578
• Coordinates: 1360689..1361714 (+)
• Length: 341 a.a.
• NCBI ID: WP_011946339.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain A194
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1355689..1366714

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LpnA194_RS06170 (LpnA194_01237)	-	1356120..1356437 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
LpnA194_RS06175 (LpnA194_01238)	-	1356474..1356845 (+)	372	WP_011946334.1	protease inhibitor I42 family protein	-
LpnA194_RS06180 (LpnA194_01239)	-	1356893..1358617 (-)	1725	WP_011946335.1	NAD-dependent malic enzyme	-
LpnA194_RS06185 (LpnA194_01240)	-	1358697..1359080 (+)	384	WP_011946336.1	hypothetical protein	-
LpnA194_RS06190 (LpnA194_01241)	surE	1359083..1359841 (+)	759	WP_011946337.1	5'/3'-nucleotidase SurE	-
LpnA194_RS06195 (LpnA194_01242)	-	1359860..1360603 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
LpnA194_RS06200 (LpnA194_01243)	rpoS	1360689..1361714 (+)	1026	WP_011946339.1	RNA polymerase sigma factor RpoS	Regulator
LpnA194_RS06205 (LpnA194_01244)	hmgA	1361814..1363064 (-)	1251	WP_011946340.1	homogentisate 1,2-dioxygenase	-
LpnA194_RS06210 (LpnA194_01245)	-	1363212..1363955 (+)	744	WP_040147395.1	YebC/PmpR family DNA-binding transcriptional regulator	-
LpnA194_RS06215 (LpnA194_01246)	ruvC	1363955..1364479 (+)	525	WP_011946342.1	crossover junction endodeoxyribonuclease RuvC	-
LpnA194_RS06220 (LpnA194_01247)	ruvA	1364476..1365075 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
LpnA194_RS06225 (LpnA194_01248)	-	1365127..1365447 (+)	321	WP_011946343.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39467.72 Da
• Isoelectric Point: 4.3705

>NTDB_id=693172 LpnA194_RS06200 WP_011946339.1 1360689..1361714(+) (rpoS) [Legionella pneumophila strain A194]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEDLDEFPEFTDDEVFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=693172 LpnA194_RS06200 WP_011946339.1 1360689..1361714(+) (rpoS) [Legionella pneumophila strain A194]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGATCTTGATGAATTTCCAGAGTTTACTGATGATGAAG
TTTTTCCTTCATTTCAGCGCGGGAAAAACATTGCTAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGCTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTGGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGTCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548