Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CKCBHOJB_RS02555 Genome accession   NZ_CP097870
Coordinates   584072..584473 (-) Length   133 a.a.
NCBI ID   WP_281050475.1    Uniprot ID   -
Organism   Thauera sp. GDN1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 579072..589473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKCBHOJB_RS02540 (CKCBHOJB_00509) - 581007..583118 (-) 2112 WP_281050472.1 methyl-accepting chemotaxis protein -
  CKCBHOJB_RS02545 (CKCBHOJB_00510) - 583168..583674 (-) 507 WP_281050473.1 chemotaxis protein CheW -
  CKCBHOJB_RS02550 (CKCBHOJB_00511) - 583681..584046 (-) 366 WP_281050474.1 response regulator -
  CKCBHOJB_RS02555 (CKCBHOJB_00512) pilG 584072..584473 (-) 402 WP_281050475.1 response regulator Regulator
  CKCBHOJB_RS02560 (CKCBHOJB_00513) - 584531..584683 (-) 153 WP_281051736.1 rubredoxin -
  CKCBHOJB_RS02565 (CKCBHOJB_00514) - 584798..585658 (+) 861 WP_281050476.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CKCBHOJB_RS02570 (CKCBHOJB_00515) thiE 585651..586283 (+) 633 WP_281050477.1 thiamine phosphate synthase -
  CKCBHOJB_RS02575 (CKCBHOJB_00516) hemL 586449..587732 (+) 1284 WP_281050478.1 glutamate-1-semialdehyde 2,1-aminomutase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14466.81 Da        Isoelectric Point: 7.1342

>NTDB_id=693166 CKCBHOJB_RS02555 WP_281050475.1 584072..584473(-) (pilG) [Thauera sp. GDN1]
MDIAGLKVMVIDDSNTIRRSAEIFLTQAGCQVLLAEDGFDALAKITDHRPDVIFVDIMMPRLDGYQTCALIKKNPLLSST
PVIMLSSRDGLFDRARGRMVGSDEYLTKPFTKDSLLKAVASHAAAGRTPIASP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=693166 CKCBHOJB_RS02555 WP_281050475.1 584072..584473(-) (pilG) [Thauera sp. GDN1]
ATGGACATTGCCGGGCTGAAGGTGATGGTCATCGACGACAGCAACACGATCCGGCGCAGCGCCGAGATCTTCCTCACCCA
GGCGGGCTGCCAGGTGCTGCTCGCCGAGGACGGCTTCGACGCGCTGGCCAAGATCACCGACCATCGTCCCGACGTGATCT
TCGTCGACATCATGATGCCGCGCCTCGACGGCTACCAGACCTGTGCGCTGATCAAGAAGAACCCGCTGCTGTCGTCGACG
CCGGTGATCATGCTGTCGTCGCGCGACGGGCTGTTCGACCGCGCGCGCGGGCGCATGGTCGGCTCCGACGAATACCTCAC
CAAACCCTTCACCAAGGACAGCCTGCTCAAGGCCGTGGCCAGCCACGCCGCCGCGGGCCGGACCCCCATCGCCTCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

66.116

90.977

0.602