Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LpnA194_RS02410 Genome accession   NZ_CP114578
Coordinates   520173..521567 (-) Length   464 a.a.
NCBI ID   WP_040145869.1    Uniprot ID   -
Organism   Legionella pneumophila strain A194     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515173..526567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS02375 (LpnA194_00470) - 515230..516240 (-) 1011 WP_040145871.1 class I fructose-bisphosphate aldolase -
  LpnA194_RS02380 (LpnA194_00471) - 516390..517124 (-) 735 WP_027219169.1 ferredoxin--NADP reductase -
  LpnA194_RS02385 (LpnA194_00472) dotV 517208..517750 (+) 543 WP_010946221.1 type IV secretion system protein DotV -
  LpnA194_RS02390 (LpnA194_00474) - 517894..518178 (-) 285 WP_011945638.1 DUF3579 domain-containing protein -
  LpnA194_RS02395 (LpnA194_00475) pssA 518408..519145 (+) 738 WP_011213110.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  LpnA194_RS02400 (LpnA194_00476) - 519387..519656 (-) 270 WP_010946224.1 HPr family phosphocarrier protein -
  LpnA194_RS02405 (LpnA194_00477) hpf 519847..520146 (-) 300 WP_010946225.1 ribosome hibernation promoting factor -
  LpnA194_RS02410 (LpnA194_00478) rpoN/rpoN1 520173..521567 (-) 1395 WP_040145869.1 RNA polymerase factor sigma-54 Machinery gene
  LpnA194_RS02415 (LpnA194_00479) rpmG 521779..521943 (-) 165 WP_003635328.1 50S ribosomal protein L33 -
  LpnA194_RS02420 (LpnA194_00480) rpmB 521958..522194 (-) 237 WP_010946227.1 50S ribosomal protein L28 -
  LpnA194_RS02425 (LpnA194_00481) trmB 522463..523140 (+) 678 WP_011945640.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LpnA194_RS02430 (LpnA194_00482) - 523152..524276 (+) 1125 WP_027219171.1 M42 family metallopeptidase -
  LpnA194_RS02435 (LpnA194_00483) ankC 524354..525841 (+) 1488 WP_011945642.1 Dot/Icm T4SS effector AnkC/LegA12 -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52972.29 Da        Isoelectric Point: 5.3275

>NTDB_id=693157 LpnA194_RS02410 WP_040145869.1 520173..521567(-) (rpoN/rpoN1) [Legionella pneumophila strain A194]
MKPTLQIGIGQHLTLTPQLQQAIRLLQLSTFDLQQEIQLVVESNPLLEATPVEEKEDVQINTNQNQDEYSDFQWSQLYNN
LNKRNNFEENDYNFDNLHCTTTNLQDHLNWQLDLTPMSDIDRVIATTIIDAINDDGFLTIPVAEIHASLNSDDFPLDIEE
IEAVRHRLQLFDPVGCASVNLAETLVLQLEQLPLEPKLLATAKKVILEDIELLGQHNYRQLMKNHQISEKTIHEILQVIH
KLNPKPGSLIHQDNIEYVIPDLTVKKIDNQWKVFLNQDILPRLSINSQYAALIQRANNSLDNQFLKHNLQEARWFLKSIQ
SRQETLLKVATCIMEYQHGFLEFGEEAMKPLILNDVASALDMHESTVSRVTTQKFINTPRGVFELKYFFSSHVNTDSGGE
CSSTAIRAVIKKLISAENRKKPLSDSKIAQLIGEQGIKVARRTVAKYREAMGIPPSNERKVISS

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=693157 LpnA194_RS02410 WP_040145869.1 520173..521567(-) (rpoN/rpoN1) [Legionella pneumophila strain A194]
ATGAAACCGACATTGCAGATTGGTATTGGTCAACATCTCACGTTAACCCCACAACTGCAACAAGCAATAAGACTGCTGCA
ATTATCCACCTTTGATTTACAACAAGAAATTCAACTCGTTGTTGAATCAAATCCTTTGCTTGAAGCCACTCCTGTTGAAG
AAAAAGAAGACGTCCAAATAAATACCAATCAGAACCAAGATGAATATTCAGATTTTCAATGGTCACAGCTGTATAATAAC
TTAAACAAGCGCAATAATTTTGAAGAAAACGATTACAATTTCGATAATTTACACTGCACTACCACCAATTTACAAGATCA
TCTTAACTGGCAACTTGACCTGACGCCTATGAGCGATATTGACCGAGTCATTGCTACAACAATTATTGATGCGATAAACG
ATGACGGCTTTTTAACCATACCCGTTGCTGAAATTCACGCCAGCTTAAATAGCGATGATTTTCCTCTGGATATAGAAGAA
ATAGAAGCAGTGAGGCACAGGCTTCAATTATTTGACCCCGTAGGATGCGCATCTGTTAATTTAGCAGAAACACTCGTTTT
GCAATTGGAACAACTTCCACTCGAACCCAAGCTTTTGGCTACTGCCAAGAAAGTCATTCTTGAAGACATTGAGTTGCTAG
GGCAACATAACTACAGACAACTCATGAAAAATCATCAAATAAGTGAAAAAACAATTCATGAAATATTACAAGTCATTCAT
AAATTAAATCCAAAACCAGGAAGTTTGATCCATCAAGATAATATTGAATATGTTATTCCCGACTTAACTGTTAAAAAGAT
AGATAATCAATGGAAAGTTTTTTTGAATCAAGATATTCTTCCCAGGCTGAGTATCAATAGCCAATATGCCGCTTTAATCC
AACGCGCAAACAATAGTCTGGATAATCAATTTTTAAAGCATAATTTACAAGAAGCACGTTGGTTTTTAAAAAGCATTCAA
AGCCGTCAGGAAACACTTCTAAAAGTAGCAACCTGTATCATGGAATACCAACATGGATTTCTGGAATTTGGTGAAGAAGC
GATGAAACCATTAATATTGAATGATGTAGCTTCTGCCTTGGATATGCATGAATCAACGGTATCAAGAGTTACAACTCAAA
AATTTATTAACACCCCTCGAGGTGTTTTTGAGTTAAAGTACTTCTTCTCCAGCCATGTCAATACTGATAGCGGAGGAGAA
TGCTCTTCCACCGCAATCCGAGCGGTAATAAAAAAATTAATTTCAGCAGAGAATAGAAAAAAACCTTTGAGTGATAGTAA
AATTGCCCAACTAATAGGTGAGCAAGGCATTAAAGTAGCAAGACGCACTGTTGCCAAATATCGCGAAGCAATGGGGATTC
CCCCATCCAATGAAAGAAAGGTTATTAGTAGTTAA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(95-289)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(303-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

38.889

100

0.422